DY305476

Overview
NameDY305476
Unique NameDY305476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1202
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_PORYE (Cytochrome c biogenesis protein ccsA OS=Porphyra yezoensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.011e-51
Identity = 109/254 (42.91%), Postives = 141/254 (55.51%), Query Frame = -1
Query:   87 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRL--------FLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 824
            S+LYE           +H   + K     + A   P A F   FA+     +M ++  LVPAL+  WLMMHVS+M+L Y             L+IT  K I L          K KN    +     S++  + E+ N+ +NS       R  +++ +D  SYR I LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW IF  YLH+R    W+G   AI+AS+GFL++WICY GVN LG GLHSYG
Sbjct:   69 SNLYESLLFLAWGLTFVHLFIENKTKSRLIGATAIPVAMFVTAFASLALPLEMQKASPLVPALKSNWLMMHVSIMMLSYAILILGSLLSILFLIITKGKDINLKGSSIGTGSYKVKNTDAKSTLIFSSQVGIVQEQSNMLINST------RMNLLESIDNLSYRTIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHSRITKSWQGKKPAILASLGFLVVWICYLGVNFLGKGLHSYG 316          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_ODOSI (Cytochrome c biogenesis protein ccsA OS=Odontella sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.724e-51
Identity = 109/246 (44.31%), Postives = 138/246 (56.10%), Query Frame = -1
Query:   87 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 824
            S+LYE           I+   +FK     + AI  P A    GFA       M +S  LVPALQ  WLM+HVSMM+L Y             LVI+  + I L +  ++ + +        + Y   K  +F  S       + +++Q LD WSYRII LGF FLT GI++G VWANEAWGSYW+WDPKETWA ITW +F  YLH+R    WEG  +AI+  +GF +IWICY GVN LG GLHSYG
Sbjct:   70 SNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAILIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCILFLVISKYQDIDLQILDESSLPLYNIM----LDYYEAK--LFSPSDEVSELGKLKLLQSLDNWSYRIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWEGKKTAILGGLGFFVIWICYLGVNFLGKGLHSYG 309          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_PORPU (Cytochrome c biogenesis protein ccsA OS=Porphyra purpurea GN=ccsA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.940e-51
Identity = 109/254 (42.91%), Postives = 142/254 (55.91%), Query Frame = -1
Query:   87 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNF-------VHVNGSFCFSEIQ-YMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 824
            S+LYE           +H   + K     + A++ P A F   FA+     +M ++  LVPAL+  WLMMHVS+M++ Y             L+IT  + I L              +  N SF FS     + E+ N+ +NS       R  +++ +D  SYRII LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW IF  YLH R    W+G   AI+AS+GFL++WICY GVN LG GLHSYG
Sbjct:   69 SNLYESLLFLAWGLTFVHLFIESKTKSRLIGAVSIPVAMFVTAFASLALPIEMQKASPLVPALKSNWLMMHVSIMMISYSILILGSLLSILFLIITRGQDINLKGSSVGTGSYTVKSLDSNPSFAFSNPSGIVQEQSNMLINST------RMNLLESIDNLSYRIIGLGFPLLTIGIVAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHCRITKSWQGKRPAILASVGFLVVWICYLGVNFLGKGLHSYG 316          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_GALSU (Cytochrome c biogenesis protein ccsA OS=Galdieria sulphuraria GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.117e-50
Identity = 109/249 (43.78%), Postives = 144/249 (57.83%), Query Frame = -1
Query:   81 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTK-MHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 824
            S+LYE           I  I +FK     + AI +P +  T  F+ S FL K M +   L+PAL+  WL+MHVS++++ Y              + +   ++ L L R N ++   +   +     N+       +L  +N  +  ++  +D  SYRII LGF FLT GI+SGAVWANEAWGSYW+WDPKETWA ITW IF IYLHTR N  W+G  SAIVA  GF+++WICY GVN LG GLHSYG F
Sbjct:   75 SNLYESLLFLSWSLTTIQLILEFKFKHKLIGAIASPISTLTLAFS-SFFLPKYMQEVSPLIPALKSNWLLMHVSVILISYAMLL----------IGSLLSILFLLLSRNNKLNYTKNNNLTTASNSND-------TLILKNEDKLNLLNTIDNLSYRIIGLGFPFLTIGIISGAVWANEAWGSYWSWDPKETWALITWIIFAIYLHTRINKSWQGKKSAIVAGFGFVVVWICYLGVNFLGKGLHSYGWF 305          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_ADICA (Cytochrome c biogenesis protein ccsA OS=Adiantum capillus-veneris GN=ccsA PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 2.489e-50
Identity = 108/253 (42.69%), Postives = 145/253 (57.31%), Query Frame = -1
Query:   87 DLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRY--------QVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 821
            +LYE           ++ I + ++      A+ AP A     FAT     +M    +LVPALQ QWLMMHVS M++ Y             L + + KV  + L+ K       SF F     MN +KN++  +  A NY  +        Q+I  LD+W+ + ISLGF  LT GILSGAVWANEAWGSYW+WDPKETWA +TW ++ IYLHT+ + +  G   A+ ASMGF ++WIC+ GVNLLG+GLH+YG
Sbjct:   69 NLYESLMFLSWGFSLLYLILEVRDQIGLSHAVLAPGAMLIHAFATLSLPQQMRSPTLLVPALQSQWLMMHVSAMLISYITLLCGSLLAITLLSLFYGKVGSVTLEHK---FEKQSFFF----LMNPRKNLWKQT-GAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEAWGSYWSWDPKETWALVTWLVYAIYLHTKVDKRKMGEGPAMTASMGFFLVWICFLGVNLLGVGLHNYG 313          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_CHLRE (Cytochrome c biogenesis protein ccsA OS=Chlamydomonas reinhardtii GN=ccsA PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 8.008e-49
Identity = 102/220 (46.36%), Postives = 130/220 (59.09%), Query Frame = -1
Query:   78 LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 737
            L ++ AP +     FAT     +M Q+  LVPALQ  WLMMHV++M++ Y             ++ +   ++ L L    F H  G+          +K + F+N+              LD  SYRII LGF FLT GILSGAVWANEAWGSYW+WDPKETWA +TW +F IYLHTR    WEG   AI+A++GFL++W CY GVNL+G GLHSYG FN
Sbjct:  171 LGSLIAPCSLLMNAFATFSLPKEMQQASPLVPALQSNWLMMHVTVMIISY----------ATLIIGSLLSILFLIL----FKHKKGT---------PKKYDNFINN--------------LDALSYRIIGLGFPFLTIGILSGAVWANEAWGSYWSWDPKETWALLTWLVFAIYLHTRLTKGWEGEKPAIIAAVGFLVVWFCYLGVNLIGEGLHSYGFFN 353          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_MESVI (Cytochrome c biogenesis protein ccsA OS=Mesostigma viride GN=ccsA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 8.854e-48
Identity = 103/249 (41.37%), Postives = 136/249 (54.62%), Query Frame = -1
Query:   81 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 824
            S++YE            H + +     N +  IT P A     FAT      M  S  LVPAL+  WL+MHV++M+  Y             L +T+ K I L           G+     I  +N++ N ++   +  +     ++ + +D  SYR I +GF  LT GI+SGAVWAN+AWGSYW+WDPKETWA ITW IF IYLHTR    W+G   AIVA +GF+I+W+CY GVNLLG GLHSYG F
Sbjct:   69 SNMYESLMFLCWCFTFFHLLIEKYIQINFIGFITVPIAMLVNAFATFFLPLDMQHSTPLVPALKSNWLIMHVTIMMASYAALILGSLLSIAFLFLTYNKQIEL----------QGN----SIGNINDEMNSYITIDIEFQKNESIELAKLIDNLSYRTIGIGFPLLTIGIISGAVWANDAWGSYWSWDPKETWALITWIIFAIYLHTRITKGWQGRRPAIVAFIGFVIVWVCYLGVNLLGQGLHSYGWF 303          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_ANTFO (Cytochrome c biogenesis protein ccsA OS=Anthoceros formosae GN=ccsA PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 8.854e-48
Identity = 113/274 (41.24%), Postives = 141/274 (51.46%), Query Frame = -1
Query:   78 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRK--------------VIRLFLKRKNFVHVNGSFCFS-----------EIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 824
            S+LYE           IH + +  +  + L  I    A  T GFAT G   +M QS +LVPALQ  WL+MHVSMM+  Y             L+ T  K              +  L L++K ++  +G    S           +    N KK     S+  R   + Q+ QQLD WSYRIISLG +FLT GILSGAVW NEAWGSYW+WDPKETWA ITW +  I++H R    W+G   AI+AS G  I+W  Y GVN    GLHSYG  N
Sbjct:   69 SNLYESFMFLSWSFCLIHIVSEIGSKNDWLGIIIVLIAMLTHGFATVGLPIEMQQSTVLVPALQSHWLIMHVSMMIPSYATLPCGSLLVIALLITTLNKNKNFPILKFNVNSFIWSLILEKKFYLGGSGGDISSRNSSSGNGSDNDSNNNNNKKTFHSLSIDCR---KLQLTQQLDYWSYRIISLGSLFLTIGILSGAVWVNEAWGSYWSWDPKETWALITWLLSAIHIHIRMIRGWQGEKPAIIASSGSSIVWFRYLGVNSPEKGLHSYGWLN 339          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_GUITH (Cytochrome c biogenesis protein ccsA OS=Guillardia theta GN=ccsA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.576e-47
Identity = 98/249 (39.36%), Postives = 132/249 (53.01%), Query Frame = -1
Query:   78 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 824
            S+LYE                ++K N   + AI +P + F   F+T      M ++  LVPAL+  WLMMHVS+M+L Y             LV+         +K +   H    F F+ +++   K           N   + +++ LD  SYR I  GF  LT GI++GAVWANEAWG+YW+WDPKETWA ITW +F  YLH R    W G   A +A++GF+++WICY GVN LG GLHSYG  N
Sbjct:   71 SNLYESLMFLTWGLLFSAIYLEYKTNLYLIGAIVSPISLFIVSFSTLSLPQDMQKAAPLVPALKSNWLMMHVSVMMLSYSTLIIGSLLAILYLVL---------IKAQQKKHSLKDFAFANLEFTFPKST---------NSTNFNLLETLDNLSYRTIGFGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKSWTGERPAYLAALGFVVVWICYLGVNFLGKGLHSYGWLN 301          
BLAST of DY305476 vs. ExPASy Swiss-Prot
Match: CCSA_MICAN (Cytochrome c biogenesis protein ccsA OS=Microcystis aeruginosa (strain NIES-843) GN=ccsA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.394e-47
Identity = 103/263 (39.16%), Postives = 138/263 (52.47%), Query Frame = -1
Query:   81 SDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVF---------------LNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 824
            S+LYE           +H I ++ +    +  +T P A     FAT     +M  S  LVPAL+  WLMMHVS+M+L Y             L++T  + I L    K      G++             +F               L +++  +  R  + + LD  SYR+I LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW +F  YLH R    W+G   AI+A+ GF+++W+CY GVNLLG GLHSYG F
Sbjct:   69 SNLYESLFFLAWGVTAVHLIAEYTSRSRLVGVVTTPVAMGITAFATLSLPGEMQTSAPLVPALKSNWLMMHVSVMMLSYAALMVGSLMAIAFLIVTRGQNIEL----KGSSVGTGAYRLQNKLSTTLSAPIFMETANGGTTALLTPTLTAMATLSPQRLSLAETLDNISYRVIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRKPAILAASGFVVVWVCYLGVNLLGKGLHSYGWF 327          
The following BLAST results are available for this feature:
BLAST of DY305476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_PORYE1.011e-5142.91Cytochrome c biogenesis protein ccsA OS=Porphyra y... [more]
CCSA_ODOSI1.724e-5144.31Cytochrome c biogenesis protein ccsA OS=Odontella ... [more]
CCSA_PORPU2.940e-5142.91Cytochrome c biogenesis protein ccsA OS=Porphyra p... [more]
CCSA_GALSU1.117e-5043.78Cytochrome c biogenesis protein ccsA OS=Galdieria ... [more]
CCSA_ADICA2.489e-5042.69Cytochrome c biogenesis protein ccsA OS=Adiantum c... [more]
CCSA_CHLRE8.008e-4946.36Cytochrome c biogenesis protein ccsA OS=Chlamydomo... [more]
CCSA_MESVI8.854e-4841.37Cytochrome c biogenesis protein ccsA OS=Mesostigma... [more]
CCSA_ANTFO8.854e-4841.24Cytochrome c biogenesis protein ccsA OS=Anthoceros... [more]
CCSA_GUITH2.576e-4739.36Cytochrome c biogenesis protein ccsA OS=Guillardia... [more]
CCSA_MICAN4.394e-4739.16Cytochrome c biogenesis protein ccsA OS=Microcysti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305476 ID=DY305476; Name=DY305476; organism=Citrus sinensis; type=EST; length=1202bp
GCCAAGTTTCGTTTCGATCTCCGCGCTGTCCTATGTTTGTATTCATCAAA
CCCTTTCTTCAATTCAAATAGGTGTTAATTAAATGAACCATAACTATGTA
ACCCTATTCCTAATAGATTGACTCCGAAATAGCATATCCAAATTATAAGA
AAGCCCATAGAAGCCACAATTGCGGAATTTACACCTTCCCATTTTGTATT
TGTTCGAGTATGTAAATAAATCCCGAATATCGTCCAAGTAATAAATGCCC
AAGTTTCTTTTGGATCCCAATTCCAATAAGACCCCCACGCCTCATTAGCC
CATACTGCTCCCGAAAGAATACCTGTGGTTAAAAAGATAAATCCTAAACT
AATAATACGATAACTCCAACGATCCAATTGTTGAATCACTTGATACCTGT
AATAATTTCTAGCGGAAAGACTATTTAGAAAAACATTCTTTTTTTCGTTC
ATGTATTGGATTTCACTGAAACAAAATGACCCATTTACATGTACAAAATT
TTTTCTTTTCAAAAAAAGCCTTATCACTTTTCGAAATGTAATGACTAGAA
GAGCCGTGGATAATAATGATCCACATAAAAGAGCTGCATAGCCCAATACC
ATCATACTTACGTGCATCATTAACCACTGGACTTGGAGAGCGGGTACTAA
TATTCTGGATTGATGCATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTT
GGGTAAAAAAAGCACTTGGTGCCGTTATAGCGCTTAAATGATTTTGATTA
TTTTTAAAATCAAAAATCTTATGAATAATAGATAAACTCCATGAAAGAAA
GATTAATGATTCATATAAATCACTTNAATGGGAAATGTCTCGAGTAAACC
CNACGGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTAGCTGTCATCC
CCCTTTCTGATGAAGCAATAGCCCTCTGAATCATCGAATAAAAGGGTATT
AAATAAATTGAAATTCCATTGAAACAAACGAAAAGATAAATGGCTTAATA
AACCTCCAAATTTAAAAAATAAAAAAAAAAAAAAAAAAAATCAAGGGGGG
GCCCGGGAACCCATTTCCCCTAAAAAGAGAGTTAATAAAATATACTGGGC
GGGTCTTTTAAAACACTCCTAACATGGGAAAAAACCCGGGTGTTATACCA
ATCTATATTTCCCCTTTTCAACCAAACCCCCCCTTTCTTTCCCCCTGCGG
GC
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