DY305475

Overview
NameDY305475
Unique NameDY305475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BRAJA (Flavoprotein wrbA OS=Bradyrhizobium japonicum GN=wrbA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.007e-32
Identity = 80/199 (40.20%), Postives = 105/199 (52.76%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            KV ++YYS YGH+E +A  + +GA    GV   + +VPE +P EV            PI    +L   D  + G  TRFG M +Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F AG  ++++V GG+PYGA T  G DGSRQP+  EL  A +QG+ IA  A+KL G
Sbjct:    3 KVLVLYYSAYGHIEAMANAVAEGAREA-GVTVDIKRVPELVPAEVAKASYYKVDQAAPIAKIEDLTNYDAIIVGTGTRFGRMGSQMANFLDQAGGLWAKGALHGKVGGAFTSSATQHGGQETTLFSIITNLLHFGMVVVGMNYGF-AGQMKLDEVTGGAPYGATTITGGDGSRQPSANELAGARYQGRQIAETARKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPB (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB18) GN=wrbA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.176e-31
Identity = 80/200 (40.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS YGH+E +A  + +GA    G    + +VPE +P E+            PI T ++LA  D  + G  TRFG + +Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y +G G+  +++V GGSPYGA T   GDG+RQP+  EL  A +QGK IA  A KL G
Sbjct:    2 AKVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPEIAKASHYKLDQAAPIATVDDLANYDAIIIGTGTRFGRITSQMANFLDQAGGLWAKGVLHGKVGGAFTSTASQHGGQETTLFSIITNLLHFGMVVVGLNYGYG-GLTTLDEVAGGSPYGATTITGGDGARQPSANELGGARYQGKVIAETAIKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_OLICO (Flavoprotein wrbA OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.176e-31
Identity = 80/199 (40.20%), Postives = 105/199 (52.76%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            KV ++YYS YGH+E +A  + +GA    G    + +VPE +P EV            P+    +LA  D  + G  TRFG M++Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F AG   +++V GG+PYGA T   GDGSR P+E EL  A +QG+ IA  AKKL G
Sbjct:    3 KVLVLYYSAYGHIEAMANAVAEGAREA-GASVDIKRVPELVPAEVAKAAHFKLDQAAPVAKVEDLANYDAIIVGTGTRFGRMSSQMANFLDQAGGLWAKGALHGKVGGAFTSTATQHGGQEMTLFSIITNLLHFGMVVVGLNYGF-AGQMGVKEVTGGAPYGATTITDGDGSRLPSENELNGARYQGRTIAETAKKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_NITWN (Flavoprotein wrbA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=wrbA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.176e-31
Identity = 82/200 (41.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS YGH+E +A  +  GA    G    + +VPE +PE V            P+   ++LA+ D  V G  TRFG M++Q  +FLD  GGLW    L GK  G F               + IT L+H GM  V + Y F AG   +++V GG+PYGA T A GDGSR P+E EL  A +QG+ IA  A KL G
Sbjct:    2 AKVLVLYYSAYGHIEAMANAVADGARQA-GATVDVKRVPELVPEAVAKAKYFKLDQAAPLAKVDDLADYDAIVVGTGTRFGRMSSQMASFLDQAGGLWARGALHGKVGGAFSSSATQHGGQETTLFSIITNLLHFGMTIVGLNYGF-AGQMGVKEVTGGAPYGATTIADGDGSRPPSENELAGARYQGRMIAETAAKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP2 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain HaA2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.625e-31
Identity = 79/200 (39.50%), Postives = 105/200 (52.50%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS YGH+E +A  + +GA    G    + +VPE +P +V            P+ T ++LA  D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F  G   + ++ GG+PYGA T   GDG+RQP+  EL  A +QGK IA  A KL G
Sbjct:    2 AKVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPDVAKASYYKLDQAAPVATIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-QGQMTLGEITGGAPYGATTLTGGDGARQPSANELAGARYQGKTIAETAIKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: RFS1_YEAST (Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 76/202 (37.62%), Postives = 105/202 (51.98%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP------ETLPEEVLGKMSAPPKS-----DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXA-LTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 564
            KV I+ YS+   +  LAE  KKG   + G EA+++QVP      E   EE  GK +A            I+T   L E D ++FG PT+FG   A++K+F D+ TGGLW    L GK AG+F               + A++ LVHHG+I+VP+GY      + ++E V G   +GAG  +G DG R P+  EL     QGK
Sbjct:    3 KVAILIYSVDDIIATLAENEKKGIE-IAGGEAEIFQVPDVSYKTEYATEE--GKEAAKVAKTNADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNGSCAWGAGCVSGIDGGRPPSLSELRVHQLQGK 201          
The following BLAST results are available for this feature:
BLAST of DY305475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BRAJA9.007e-3240.20Flavoprotein wrbA OS=Bradyrhizobium japonicum GN=w... [more]
WRBA_RHOPB1.176e-3140.00Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_OLICO1.176e-3140.20Flavoprotein wrbA OS=Oligotropha carboxidovorans (... [more]
WRBA_NITWN1.176e-3141.00Flavoprotein wrbA OS=Nitrobacter winogradskyi (str... [more]
WRBA_RHOP27.625e-3139.50Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
RFS1_YEAST1.220e-2037.62Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305475 ID=DY305475; Name=DY305475; organism=Citrus sinensis; type=EST; length=839bp
GCCAAAGTGTATATTGTGTACTATTCCATGTATGGACATGTAGAGAAACT
GGCAGAAGAGATAAAGAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCA
AATTATGGCAGGTCCCTGAGACACTACCTGAGGAGGTACTTGGTAAGATG
AGTGCACCACCAAAGAGTGATGTACCTATTATTACCCCCAACGAACTTGC
TGAGGCTGATGGGTTTGTTTTTGGCTTCCCAACAAGATTTGGAATGATGG
CTGCTCAATTTAAAGCATTTTTAGATGCTACTGGTGGTCTATGGAGGACA
CAACAGCTCGCTGGCAAACCTGCTGGGATGTTCTACAGCACTGGGTCACA
AGGTGGTGGACAAGAGACTACAGCGTTGACGGCAATTACTCAGCTTGTTC
ACCATGGGATGATATTTGTTCCTATTGGATACACATTTGGTGCTGGCATG
TTTGAGATGGAGAAAGTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTT
TGCTGGAGATGGCTCGAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTT
TCCACCAGGGAAAACACATTGCGGGCATTGCAAAGAAGCTGAAGGGAAGT
GCTTAAATATTTCAATTTACAATACAACCATTAGGTGGACTTATTCCATT
CTTTTCGTCTCTAGAATTCCCGGTTTCCTATATCTTCTGGTTTGCAAACA
ATAAATTCTTGCTTTGTTATCAGTATAAGCTTTGTGCGTGTGTCATAAAG
TGGCTTTTCTTCATGAAAAAAAGTTGCTTGGTTGATTATTTGTACTTCCT
CTATACCTTAAATTGGGAAATATTATGTCTTCGTCCTTT
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