DY305475

Overview
NameDY305475
Unique NameDY305475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_RHORT (Flavoprotein wrbA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=wrbA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.601e-42
Identity = 92/199 (46.23%), Postives = 120/199 (60.30%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            KV ++YYSMYGH++ LA+EI  G + V+GVE  L +VPE +  E+L  + A    D PI + +ELA+ DG + G PTRFG MA Q + FLD TGGLW   +L GK  G F              L+  T  +HHGM+ V + Y     MF+  + + G PYGA T A GDGSRQP++ E   A  QG+H AG+AKKLKG
Sbjct:    6 KVLVLYYSMYGHIDTLAKEIAAGVAEVDGVEVALKRVPEHMSAELLSTIHARTDFDTPIASVDELADYDGILIGTPTRFGNMAGQMRNFLDQTGGLWAKGKLVGKAGGAF-TSTATGGGAETTLLSVYTNFLHHGMVVVGVPYG-TPEMFDTSEARAGGPYGAATLAGGDGSRQPSDKERTIARFQGRHFAGVAKKLKG 202          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_METEP (Flavoprotein wrbA OS=Methylobacterium extorquens (strain PA1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 93/200 (46.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS +GHVE++A+ + +GA    G E  L +VPE +P+EV  +       + PI T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK    F               +  T L HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+E+EL+ A  QG+H+AGIA KL G
Sbjct:    2 AKVLVLYYSSWGHVEQMAKAVAEGARET-GAEVALKRVPELVPDEVAKQFHYKLDQEAPIATVEELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSEVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_METC4 (Flavoprotein wrbA OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 93/200 (46.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS +GHVE++A+ + +GA    G E  L +VPE +P+EV  +       + PI T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK    F               +  T L HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+E+EL+ A  QG+H+AGIA KL G
Sbjct:    2 AKVLVLYYSSWGHVEQMAKAVAEGARET-GAEVALKRVPELVPDEVAKQFHYKLDQEAPIATVEELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSEVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_MARAV (Flavoprotein wrbA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 89/200 (44.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYSMYGH+E +A  + +GA  V+G +  + +VPET+ +E             P+  P ELA+ D  +FG PTRFG MA Q + FLD TGGLW   +L GK  G  +              +  T L HHGM+ VP+GY      F++ +V GG+PYGA T A GDGSRQP+E EL  A  QGKH+A +A KL G
Sbjct:    2 AKVLVLYYSMYGHIETMANTVAEGARGVDGADVVVKRVPETMADEAFLNAGGKADQGAPVADPKELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWAEGKLHGK-VGSVFTSTGTGGGQEQTITSFWTTLAHHGMVLVPLGYGI-PEFFDISEVNGGTPYGASTIAGGDGSRQPSEKELAIARFQGKHVAELAIKLHG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURVG (Flavoprotein wrbA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 89/198 (44.95%), Postives = 120/198 (60.61%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ + +GA SV GVE  L +VPET+P +    +        P+ T +ELA  D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+ +M+++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHVAEGAKSVPGVEVTLKRVPETIPVDQAKAIGVKVDQAAPVATVDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVDMKEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAQLAAKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURCJ (Flavoprotein wrbA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 90/198 (45.45%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ I +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKVDQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELANKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURCH (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain HI2424) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 90/198 (45.45%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ I +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKVDQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURCC (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain MC0-3) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 90/198 (45.45%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ I +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKVDQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_TOLAT (Flavoprotein wrbA OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.793e-41
Identity = 93/199 (46.73%), Postives = 115/199 (57.79%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            KV ++Y+SMYGH+E +A  I +GA  V GVE  + +VPET+            +   P+ TP EL + D  +FG PTRFG M AQ + FLD TGGLW    L GK A +F               T  T L HHGM+ VPIGY   A MF++  V GG+PYGA T A GDGSRQP   EL  A  QGKH+A +A K+KG
Sbjct:    3 KVLVLYHSMYGHIETMANSIAEGAREVSGVEVTIKRVPETMDPARFAAAGGKTEQSAPVATPAELVDYDAIIFGVPTRFGNMTAQMRNFLDQTGGLWAKGALFGKIASVFASTGVGGGQEMTITST-WTTLAHHGMVIVPIGYG-TAEMFDISHVGGGTPYGATTLAGGDGSRQPDARELAIARFQGKHVATVAAKMKG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURM1 (Flavoprotein wrbA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.793e-41
Identity = 89/198 (44.95%), Postives = 120/198 (60.61%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+++ +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQQVAEGAKSVPGVEVTLKRVPETIPADQAKAIGIKTDQAAPVATVDELADYDAILFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
The following BLAST results are available for this feature:
BLAST of DY305475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_RHORT9.601e-4246.23Flavoprotein wrbA OS=Rhodospirillum rubrum (strain... [more]
WRBA_METEP2.139e-4146.50Flavoprotein wrbA OS=Methylobacterium extorquens (... [more]
WRBA_METC42.139e-4146.50Flavoprotein wrbA OS=Methylobacterium chloromethan... [more]
WRBA_MARAV2.139e-4144.50Flavoprotein wrbA OS=Marinobacter aquaeolei (strai... [more]
WRBA_BURVG2.139e-4144.95Flavoprotein wrbA OS=Burkholderia vietnamiensis (s... [more]
WRBA_BURCJ2.139e-4145.45Flavoprotein wrbA OS=Burkholderia cepacia (strain ... [more]
WRBA_BURCH2.139e-4145.45Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURCC2.139e-4145.45Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_TOLAT2.793e-4146.73Flavoprotein wrbA OS=Tolumonas auensis (strain DSM... [more]
WRBA_BURM12.793e-4144.95Flavoprotein wrbA OS=Burkholderia multivorans (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305475 ID=DY305475; Name=DY305475; organism=Citrus sinensis; type=EST; length=839bp
GCCAAAGTGTATATTGTGTACTATTCCATGTATGGACATGTAGAGAAACT
GGCAGAAGAGATAAAGAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCA
AATTATGGCAGGTCCCTGAGACACTACCTGAGGAGGTACTTGGTAAGATG
AGTGCACCACCAAAGAGTGATGTACCTATTATTACCCCCAACGAACTTGC
TGAGGCTGATGGGTTTGTTTTTGGCTTCCCAACAAGATTTGGAATGATGG
CTGCTCAATTTAAAGCATTTTTAGATGCTACTGGTGGTCTATGGAGGACA
CAACAGCTCGCTGGCAAACCTGCTGGGATGTTCTACAGCACTGGGTCACA
AGGTGGTGGACAAGAGACTACAGCGTTGACGGCAATTACTCAGCTTGTTC
ACCATGGGATGATATTTGTTCCTATTGGATACACATTTGGTGCTGGCATG
TTTGAGATGGAGAAAGTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTT
TGCTGGAGATGGCTCGAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTT
TCCACCAGGGAAAACACATTGCGGGCATTGCAAAGAAGCTGAAGGGAAGT
GCTTAAATATTTCAATTTACAATACAACCATTAGGTGGACTTATTCCATT
CTTTTCGTCTCTAGAATTCCCGGTTTCCTATATCTTCTGGTTTGCAAACA
ATAAATTCTTGCTTTGTTATCAGTATAAGCTTTGTGCGTGTGTCATAAAG
TGGCTTTTCTTCATGAAAAAAAGTTGCTTGGTTGATTATTTGTACTTCCT
CTATACCTTAAATTGGGAAATATTATGTCTTCGTCCTTT
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