DY305475

Overview
NameDY305475
Unique NameDY305475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURCA (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain AU 1054) GN=wrbA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.793e-41
Identity = 89/198 (44.95%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGH+E +A+ I +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHIETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKVDQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: YCP4_YEAST (Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae GN=YCP4 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.648e-41
Identity = 94/199 (47.24%), Postives = 123/199 (61.81%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPK-SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            K+ I+ YS YGH++ LA+ +KKG  +  G +A +++V ETLP+EVL KM+AP K  D+P+ T   L E D F+FG PTRFG + AQ+ AF D TGGLW    L GK AG+F                 ++ L HHG+IF+P+GY    A +  +E+V GGSP+GAGT AG DGSR  + LEL  A  QGK     AKKL
Sbjct:    3 KIAIITYSTYGHIDVLAQAVKKGVEAAGG-KADIYRVEETLPDEVLTKMNAPQKPEDIPVATEKTLLEYDAFLFGVPTRFGNLPAQWSAFWDKTGGLWAKGSLNGKAAGIFVSTSSYGGGQESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGGSPWGAGTLAGPDGSRTASPLELRIAEIQGKTFYETAKKL 200          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_AGRRK (Flavoprotein wrbA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=wrbA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.765e-41
Identity = 94/198 (47.47%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGH+EK+A  + +GA S  G E  + +VPE +PEEV          + PI TP+ELAE D  + G  TRFG +A+Q + F D TGGLW + +L GK   +F              L  I  L+HHGM  V + Y F AG    E+VKGGSPYGA T   GDGSRQP+E+ELE A +QG H+A IA KL
Sbjct:    2 AKVLVLYYSAYGHIEKMAYAVAEGAKSA-GAEVTVKRVPELVPEEVAKASYFKLDQEAPIATPDELAEYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFSGKLVGKVGSVFTSSATQHGGQESTILGFIPTLLHHGMAVVGLPYAF-AGQMGTEEVKGGSPYGASTITNGDGSRQPSEIELEAAKYQGAHVAKIAAKL 197          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_GEOUR (Flavoprotein wrbA OS=Geobacter uraniireducens (strain Rf4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.386e-40
Identity = 90/201 (44.78%), Postives = 117/201 (58.21%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA----PPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            KV I YYSMYGH+ ++AE + +GA  V G E  + +VPETLP +VL KM A       + +P+ T  ELA+AD  +FG PTRFG M  Q + FLDATGGLW    L GK   +F              L+    L+H GM+ V + Y F  G    +++ GGSPYGA T AG  G R P+E +L  A +QGKH+A IA +L
Sbjct:    2 KVLIAYYSMYGHIHRMAEAVAEGAREVAGAEVLIRRVPETLPADVLEKMGAVETQKKMAQIPVCTIGELADADAIIFGTPTRFGNMCGQMRQFLDATGGLWMKGSLVGKLGSVFTSSATQHGGQESTILSFHITLLHQGMVVVGLPYAF-QGQMRNDEIIGGSPYGASTIAGTQGERSPSENDLAAARYQGKHVASIAARL 201          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.386e-40
Identity = 89/198 (44.95%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ I +GA SV GVE  L +VPET+P +    +        P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGK +A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHIAEGAKSVAGVEVTLKRVPETIPVDQARAIGVKVDQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKRVAELASKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_AZOSB (Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN=wrbA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.365e-40
Identity = 91/200 (45.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS YGH+EK+AE +  GA    G E  + +VPE +PEEV  K         P+ T  EL + D  +FG PTRFG MA+Q + FLD TGGLW + +L GK   +F               +  T L+HHGM+ V + YT  A    M+++ GGSPYGA T A GDG+RQP+E EL  A  QG H+A IA KL G
Sbjct:    2 AKVLVLYYSSYGHIEKMAEAVAAGARDA-GAEVTIKRVPELVPEEVARKSGMKLDQPAPVATVGELPDYDAIIFGTPTRFGNMASQMRNFLDQTGGLWMSGKLVGKVGSVFASTATQHGGQETTITSFHTTLLHHGMVIVGLPYT-EARQMNMDEITGGSPYGATTLAKGDGTRQPSENELAMARFQGGHVAKIAAKLAG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_METPB (Flavoprotein wrbA OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=wrbA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 91/200 (45.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYS +GHVE++A  + +GA    G E  + +VPE +PEEV  +         PI T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK    F               +  T + HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+++EL+ A  QG+H+AGIA KL G
Sbjct:    2 AKVLVLYYSSWGHVEQMANAVAEGAREA-GAEVAVKRVPELVPEEVARQFHYKLDQAAPIATVEELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVMFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSQVELDGARFQGRHVAGIAAKLAG 199          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURPP (Flavoprotein wrbA OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=wrbA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.088e-40
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            AKV ++YYSMYGH+E +A+ + +GA SV G E  + +V ET+P +             P+ TP+ELA  D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  + L+H GM+ V + Y+  AG+  M ++ GG+PYGA T AG DGSRQP++ EL+ A  QGKH+A +A K+ G
Sbjct:    2 AKVLVLYYSMYGHIETMADAVAEGARSVPGTEVTIKRVAETIPADQAAAHGVKLDQKAPVATPDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHSTLLHQGMVIVGVPYSC-AGLVNMTEITGGTPYGATTLAGADGSRQPSQNELDIARFQGKHVASLALKIAG 200          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_THICR (Flavoprotein wrbA OS=Thiomicrospira crunogena (strain XCL-2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.034e-40
Identity = 91/200 (45.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKGS 600
            KV ++YYSMYGHVE +A+ I +GA SVEGVE  + +VPE + +E   K         PI TP+ELA+ D  +FG PTRFG M AQ + FLD TGGLW   +L  K   +F               +  T L H+GMI V + Y+    M  M ++ GG+PYGA T A GDGSRQP+E E++ A  QG H+A +AKK   S
Sbjct:    3 KVLVLYYSMYGHVETMAKAIAEGAGSVEGVEVTIKRVPELMTDEQAKKAGVKLDQSAPIATPSELADYDAIIFGTPTRFGNMCAQMRNFLDQTGGLWAGGKLINKVGSVFTSTGTQHGGQETTITSFHTNLFHYGMIVVGVPYSC-QEMTNMNEITGGTPYGASTLAGGDGSRQPSENEIKIAKCQGVHVAKVAKKQSAS 201          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_SYNFM (Flavoprotein wrbA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=wrbA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.034e-40
Identity = 90/201 (44.78%), Postives = 122/201 (60.70%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPK----SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            KV IV+YSMYGH+ ++AE + +G  SV+G EA L +VPETL  E+L  M A       + +P+ T +EL  AD  +FG PTRFG MA Q + FLDATG LW +  L GK   +F              L+    L+H GM+ V + Y+F  G   M+++ GGSPYGA T AG  G+R P++ EL  A +QG+H+A IA+KL
Sbjct:    2 KVLIVFYSMYGHIYRMAEAVAEGVRSVDGAEAVLRRVPETLSAEILASMGATEAQKQFAHIPVCTVDELGAADAVIFGTPTRFGNMAGQMRQFLDATGRLWVSGALVGKAGSVFTSSNTQHGGQESTILSFHINLLHQGMVIVGLPYSF-QGQSTMDEITGGSPYGASTIAGPTGARTPSDNELAGARYQGRHVAEIARKL 201          
The following BLAST results are available for this feature:
BLAST of DY305475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BURCA2.793e-4144.95Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
YCP4_YEAST3.648e-4147.24Flavoprotein-like protein YCP4 OS=Saccharomyces ce... [more]
WRBA_AGRRK4.765e-4147.47Flavoprotein wrbA OS=Agrobacterium radiobacter (st... [more]
WRBA_GEOUR1.386e-4044.78Flavoprotein wrbA OS=Geobacter uraniireducens (str... [more]
WRBA_BURS31.386e-4044.95Flavoprotein wrbA OS=Burkholderia sp. (strain 383)... [more]
WRBA_AZOSB2.365e-4045.50Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN... [more]
WRBA_METPB3.088e-4045.50Flavoprotein wrbA OS=Methylobacterium populi (stra... [more]
WRBA_BURPP3.088e-4043.00Flavoprotein wrbA OS=Burkholderia phytofirmans (st... [more]
WRBA_THICR4.034e-4045.50Flavoprotein wrbA OS=Thiomicrospira crunogena (str... [more]
WRBA_SYNFM4.034e-4044.78Flavoprotein wrbA OS=Syntrophobacter fumaroxidans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305475 ID=DY305475; Name=DY305475; organism=Citrus sinensis; type=EST; length=839bp
GCCAAAGTGTATATTGTGTACTATTCCATGTATGGACATGTAGAGAAACT
GGCAGAAGAGATAAAGAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCA
AATTATGGCAGGTCCCTGAGACACTACCTGAGGAGGTACTTGGTAAGATG
AGTGCACCACCAAAGAGTGATGTACCTATTATTACCCCCAACGAACTTGC
TGAGGCTGATGGGTTTGTTTTTGGCTTCCCAACAAGATTTGGAATGATGG
CTGCTCAATTTAAAGCATTTTTAGATGCTACTGGTGGTCTATGGAGGACA
CAACAGCTCGCTGGCAAACCTGCTGGGATGTTCTACAGCACTGGGTCACA
AGGTGGTGGACAAGAGACTACAGCGTTGACGGCAATTACTCAGCTTGTTC
ACCATGGGATGATATTTGTTCCTATTGGATACACATTTGGTGCTGGCATG
TTTGAGATGGAGAAAGTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTT
TGCTGGAGATGGCTCGAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTT
TCCACCAGGGAAAACACATTGCGGGCATTGCAAAGAAGCTGAAGGGAAGT
GCTTAAATATTTCAATTTACAATACAACCATTAGGTGGACTTATTCCATT
CTTTTCGTCTCTAGAATTCCCGGTTTCCTATATCTTCTGGTTTGCAAACA
ATAAATTCTTGCTTTGTTATCAGTATAAGCTTTGTGCGTGTGTCATAAAG
TGGCTTTTCTTCATGAAAAAAAGTTGCTTGGTTGATTATTTGTACTTCCT
CTATACCTTAAATTGGGAAATATTATGTCTTCGTCCTTT
back to top