DY305475

Overview
NameDY305475
Unique NameDY305475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_METRJ (Flavoprotein wrbA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=wrbA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.825e-39
Identity = 90/198 (45.45%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE++A  + +GA    G E  + +VPE +PEEV  +         P+ T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK   +F               +  T L HHGM+ V + Y+F  G   +E VKG +PYGA T A GDGSRQP+ +ELE A  QG+H+AGIA KL
Sbjct:    2 AKVLVLYYSTYGHVEQMAYAVAEGARET-GAEVVVKRVPELVPEEVARQNHFKLDQAAPVATVAELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWMKGALVGKVGSVFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-QGQAGVEAVKGNTPYGASTIADGDGSRQPSAVELEGARFQGRHVAGIAAKL 197          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_BURA4 (Flavoprotein wrbA OS=Burkholderia ambifaria (strain MC40-6) GN=wrbA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.695e-38
Identity = 86/198 (43.43%), Postives = 115/198 (58.08%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGHVE +A+ + +GA SV GVE  L +VPET+P +    +        P+ T +EL   D  +FG PTRFG MA Q + FLD TG LW    L GK   +F               +  T L+H GM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH+A +A KL
Sbjct:    2 AKVLVLYYSSYGHVETMAQHVAEGAKSVPGVEVTLKRVPETIPADQAKAIGVKVDQAAPVATVDELPNYDAIIFGTPTRFGNMAGQMRTFLDQTGCLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_GEOLS (Flavoprotein wrbA OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=wrbA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.891e-38
Identity = 91/202 (45.05%), Postives = 117/202 (57.92%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPK----SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            +K+ IV+YSMYGH+  +AE +  G  SV G  A+L QVPE + EEVL K  A       + +P  T   LAEAD  +FG PTRFG MAAQ + FLD TG LW +  L GK   +F               +  + L+HHGMI V + YT    +  M+++ GGSPYGA T A GDGSR+P+E EL  A  QG H+A I  +L
Sbjct:    2 SKIQIVFYSMYGHIHTMAEAVADGVRSVGGCSAELLQVPELISEEVLEKYGAKAARAAFAHIPTATVERLAEADAIIFGTPTRFGNMAAQMRNFLDQTGKLWLSGGLVGKVGSVFASTATQHGGQETTITSFHSTLLHHGMIIVGVPYT-EQRLLTMDEISGGSPYGATTLAGGDGSRRPSENELAIARFQGAHVAKITARL 202          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_NITOC (Flavoprotein wrbA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=wrbA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.098e-37
Identity = 86/197 (43.65%), Postives = 114/197 (57.87%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            K+ ++YYSMYGHVE +A  + +GA SVE VE  L +VPE +PEE+     A    + PI T +EL E D  +FG PTRFG M AQ + FLD TG  W +  L GK   +F               +  + L+H GM+ V + Y+  A +  M ++ GGSPYGA T A  DGSRQP+E EL  A  QG+H+A   KK+
Sbjct:    3 KLLVLYYSMYGHVETMAHAVAEGARSVEEVEVTLKRVPELMPEEIARNAGAKLAQEAPIATVDELPEYDAIIFGTPTRFGNMCAQMRNFLDQTGKHWMSGALIGKVGSVFTSTASQHGGQETTITSFHSTLLHQGMVIVGVPYSCQA-LLNMNEITGGSPYGASTLADADGSRQPSENELTIARFQGEHVAKFTKKV 198          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_SYNAS (Flavoprotein wrbA OS=Syntrophus aciditrophicus (strain SB) GN=wrbA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.874e-37
Identity = 90/201 (44.78%), Postives = 115/201 (57.21%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA----PPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGS-RQPTELELEQAFHQGKHIAGIAKKL 591
            K+ +VYYS YGHV +LAE + +GAS +  VE  + +VPETLPE +L K+         + VP+    EL  AD  +FG P RFG M  Q ++FLDATGGLW    L GK   +F              L+  T L+HHGMI V + YTF  G    +++ G SPYGA T AG  + R PTE EL  A  QG+H+A IA KL
Sbjct:    2 KIMVVYYSAYGHVHRLAEAVAEGASEIVDVEVVMRRVPETLPEALLKKIGVFEAQQAFAHVPVCEVAELETADAILFGTPARFGNMCGQMRSFLDATGGLWAKGALVGKVGSVFTSTGTQHGGQESTILSFHTTLLHHGMIIVGLPYTF-QGQSRNDEITGCSPYGASTIAGSANDRWPTENELAGANFQGRHVACIAGKL 201          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_METMA (Flavoprotein wrbA OS=Methanosarcina mazei GN=wrbA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.874e-37
Identity = 88/207 (42.51%), Postives = 120/207 (57.97%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPK----SDVPIIT----PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            KV I+++S++ H+ ++AE +  GA  VEG E  ++QVPETLPE+VL KM A       + +P++T     + LA AD  +FG PTR+GMM AQ +A LD  G LW      GK   +F              L+    L+H GM+ V + Y        M ++ GGSPYGA T A GDGSRQP+E ELE A +QG+H+  IAKK+ G
Sbjct:    3 KVNIIFHSVHAHIYRMAEAVAAGAREVEGAEVGIYQVPETLPEDVLEKMGAIETKKLFAHIPVVTRDMYEDVLAGADALIFGTPTRYGMMTAQMRAVLDGLGKLWSEDAFVGKVGSVFTSSGTQHGGQESTILSFHVTLLHLGMVIVGLPYAEKRQTI-MNEITGGSPYGASTIAGGDGSRQPSENELEMARYQGRHVTQIAKKIAG 208          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA1_RHIME (Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.874e-37
Identity = 85/198 (42.93%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            A+V ++YYS YGH+E +A  + +GA S  G E  + +VPE +PE+V            P+ T  ELA+ D  +FG  TR+G +A+Q + F+D TGGLW   +L GK    F              L  I  ++HHGM+ V + Y F  G   +E+VKGGSPYGA T   GDGSRQP+ +ELE A  QG H+A IA KL
Sbjct:    2 ARVLVLYYSAYGHIETMAHAVAEGARSA-GAEVAVKRVPELVPEDVAKASHFKLDQPAPVATVEELADYDAIIFGAGTRYGTVASQLRNFIDQTGGLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMMHHGMVVVGLPYAF-QGQMGVEEVKGGSPYGASTITGGDGSRQPSAVELEAARFQGAHVARIAAKL 197          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: PST2_YEAST (Protoplast secreted protein 2 OS=Saccharomyces cerevisiae GN=PST2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.196e-37
Identity = 89/189 (47.09%), Postives = 113/189 (59.79%), Query Frame = 1
Query:    4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY-TFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 564
            +V I+ Y++YGHV   AE  KKG  +  G  A ++QV ETL  EV+  +   PK D PI T + L E D F+FG PTRFG   AQ+KAF D TGGLW    L GK AG F              + +++ L HHG+IFVP+GY    A +  M++V GGSP+GAGT AG DGSR P+ LEL+    QGK
Sbjct:    3 RVAIIIYTLYGHVAATAEAEKKGIEAAGG-SADIYQVEETLSPEVVKALGGAPKPDYPIATQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRTGGLWAKGALHGKVAGCF-VSTGTGGGNEATIMNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSPSALELQVHEIQGK 189          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_CHRSD (Flavoprotein wrbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=wrbA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.120e-37
Identity = 88/201 (43.78%), Postives = 117/201 (58.21%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIIT-PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 597
            +KV ++YYS YGHVE LA  + +G   V G +  L++V E +P+EV  K      +   ++  P+ LAE D  V G PTRFG MA+Q + F D TGGLW   +L GK  G F               +  T L+HHGM  V + Y+  A + E+++V GG+PYGA T A GDGSRQP+E EL  A  QG+HIA +A KL G
Sbjct:    2 SKVLVLYYSSYGHVETLANAVAEGVRGVAGTQVDLYRVAELVPDEVAAKSGYKEDTTAAVLDDPSVLAEYDAIVVGTPTRFGNMASQMRNFWDKTGGLWAQGKLIGKLGGAFTSTASQHGGQETTLTSIHTTLLHHGMAVVGVPYSCPA-LTELDEVSGGTPYGATTIAGGDGSRQPSENELTIARFQGQHIAEMAAKLAG 201          
BLAST of DY305475 vs. ExPASy Swiss-Prot
Match: WRBA_RHISN (Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234) GN=wrbA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.299e-37
Identity = 83/198 (41.92%), Postives = 113/198 (57.07%), Query Frame = 1
Query:    1 AKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKL 591
            AKV ++YYS YGH+EK+A  + +GA S  G E  + +VPE + EEV            P+ T  EL + D  +FG  TR+G +A+Q + F+D TG LW   +L GK    F              L  I  ++HHGM+ V + Y F  G   ++++KGGSPYGA T   GDGSRQP+E+EL+ A  QG H+A IA KL
Sbjct:    2 AKVLVLYYSAYGHIEKMAYAVAEGAESA-GAEVSVKRVPELVSEEVAKASHYKIDQPAPVATVEELGDYDAIIFGAGTRYGTVASQLRNFIDQTGSLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMLHHGMVVVGLPYAF-QGQMGIDEIKGGSPYGASTITGGDGSRQPSEIELDAARFQGAHVARIAAKL 197          
The following BLAST results are available for this feature:
BLAST of DY305475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_METRJ5.825e-3945.45Flavoprotein wrbA OS=Methylobacterium radiotoleran... [more]
WRBA_BURA41.695e-3843.43Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]
WRBA_GEOLS2.891e-3845.05Flavoprotein wrbA OS=Geobacter lovleyi (strain ATC... [more]
WRBA_NITOC1.098e-3743.65Flavoprotein wrbA OS=Nitrosococcus oceani (strain ... [more]
WRBA_SYNAS1.874e-3744.78Flavoprotein wrbA OS=Syntrophus aciditrophicus (st... [more]
WRBA_METMA1.874e-3742.51Flavoprotein wrbA OS=Methanosarcina mazei GN=wrbA ... [more]
WRBA1_RHIME1.874e-3742.93Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1... [more]
PST2_YEAST3.196e-3747.09Protoplast secreted protein 2 OS=Saccharomyces cer... [more]
WRBA_CHRSD7.120e-3743.78Flavoprotein wrbA OS=Chromohalobacter salexigens (... [more]
WRBA_RHISN9.299e-3741.92Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305475 ID=DY305475; Name=DY305475; organism=Citrus sinensis; type=EST; length=839bp
GCCAAAGTGTATATTGTGTACTATTCCATGTATGGACATGTAGAGAAACT
GGCAGAAGAGATAAAGAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCA
AATTATGGCAGGTCCCTGAGACACTACCTGAGGAGGTACTTGGTAAGATG
AGTGCACCACCAAAGAGTGATGTACCTATTATTACCCCCAACGAACTTGC
TGAGGCTGATGGGTTTGTTTTTGGCTTCCCAACAAGATTTGGAATGATGG
CTGCTCAATTTAAAGCATTTTTAGATGCTACTGGTGGTCTATGGAGGACA
CAACAGCTCGCTGGCAAACCTGCTGGGATGTTCTACAGCACTGGGTCACA
AGGTGGTGGACAAGAGACTACAGCGTTGACGGCAATTACTCAGCTTGTTC
ACCATGGGATGATATTTGTTCCTATTGGATACACATTTGGTGCTGGCATG
TTTGAGATGGAGAAAGTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTT
TGCTGGAGATGGCTCGAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTT
TCCACCAGGGAAAACACATTGCGGGCATTGCAAAGAAGCTGAAGGGAAGT
GCTTAAATATTTCAATTTACAATACAACCATTAGGTGGACTTATTCCATT
CTTTTCGTCTCTAGAATTCCCGGTTTCCTATATCTTCTGGTTTGCAAACA
ATAAATTCTTGCTTTGTTATCAGTATAAGCTTTGTGCGTGTGTCATAAAG
TGGCTTTTCTTCATGAAAAAAAGTTGCTTGGTTGATTATTTGTACTTCCT
CTATACCTTAAATTGGGAAATATTATGTCTTCGTCCTTT
back to top