DY305474

Overview
NameDY305474
Unique NameDY305474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1266
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.661e-42
Identity = 102/247 (41.30%), Postives = 144/247 (58.30%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   +     Y + S     GG           R G  H+ G ++  TG AF  +RE
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY--DVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 5.928e-42
Identity = 101/247 (40.89%), Postives = 143/247 (57.89%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   +     Y + S     GG           R G  H+ G ++  TG AF  +RE
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIY--DVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.725e-41
Identity = 101/247 (40.89%), Postives = 143/247 (57.89%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWA NLE E + I QV  ++ +I+MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  +LR+FF   +     Y + S     GG           R G  H+ G ++  TG AF  +RE
Sbjct:   14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIY--DVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.253e-41
Identity = 101/247 (40.89%), Postives = 143/247 (57.89%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   +     Y + S     GG           R G  H+ G ++  TG AF  +RE
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIY--DVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMRE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.942e-41
Identity = 98/247 (39.68%), Postives = 145/247 (58.70%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF   +          +L  G      +L     R G  H+ G ++  TG AF  ++E
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDL--QRIGRQHQAGSDSLLTGMAFFRMKE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.942e-41
Identity = 98/247 (39.68%), Postives = 145/247 (58.70%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLRE 1013
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF   +          +L  G      +L     R G  H+ G ++  TG AF  ++E
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDL--QRIGRQHQAGSDSLLTGMAFFRMKE 243          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.279e-36
Identity = 79/183 (43.17%), Postives = 121/183 (66.12%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEF 821
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL   S+P+  ++F
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDF 330          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.879e-30
Identity = 85/261 (32.57%), Postives = 131/261 (50.19%), Query Frame = 3
Query:  279 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTF----MTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNLREGNFFPNGREKKP 1049
            V+ SN+E EF  I   ++ YP+++MDTEFPG+V  P         FR ++  ++ +V   NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP     F    +  F  +F    +  T     + L  G      +L     R G  H+ G +   T   F  +++  F  N  +  P
Sbjct:   26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQQVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLD--VKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAP 270          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.560e-26
Identity = 81/258 (31.40%), Postives = 121/258 (46.90%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAF---KNLREGNFFPNG 1034
            R VW SN++ E   +++ + R+P I+ DTE+PG+++R   D S+          + Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R+EGVD   +     + +     + V +VTF  AYDF Y + IL    LP    EF T +   FG  + T         L    G S         R G AH  G ++  T   F   K++ E + F  G
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFARG 249          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.571e-18
Identity = 77/248 (31.05%), Postives = 107/248 (43.15%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEF-LTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNL 1007
            EVW  N ++E   I   +     I++DTEFPG +    +D S    +R          +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ REEG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP    EF  TV ++   + +       + S L    G           R G AH  G ++  T R F  L
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD---------MKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228          
The following BLAST results are available for this feature:
BLAST of DY305474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_BOVIN2.661e-4241.30CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_XENLA5.928e-4240.89CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE1.725e-4140.89CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_XENTR2.253e-4140.89CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT8_MOUSE2.942e-4139.68CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN2.942e-4139.68CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
POP2_YEAST1.279e-3643.17Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_CAEEL8.879e-3032.57CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH4.560e-2631.40Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH1.571e-1831.05Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305474 ID=DY305474; Name=DY305474; organism=Citrus sinensis; type=EST; length=1266bp
GCAAGCAACATCTCCGCCCACCACCAGGAAACACAATAAGCTATCGGTAT
ATCTCTATATATATATATTCCTCTATTAGAACTTTTCACAAACACCTCTC
AACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCTC
ACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATC
ATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAG
CTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAAT
CCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCC
ATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTC
CACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTT
TGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTC
TCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAA
ATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCC
ACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAG
CGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGAT
GTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACA
GCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTG
CCCAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGGTA
CACATTTATGACGTCAACACATTATGCGGTTCTGTCAGACCTTGTACGGG
GGGGTGGGACGAGTGGCTCGGAACTTGGGAGGTGACCCGGGCGGGCGGGG
AGTGCCCACAGGCCCGGTTGGGAAACCTTCTGAACTGGCAGGGCCTTCAA
AAATTTAAGGGAGGGGAATTTCTTCCCCAACGGACGGGAAAAAAAGCCCG
GGGTATAATTGGAAGAAAAAAGGGAAAAAATTAATTTTTGGCCCAATAAA
ATAATTTTGAGATTTTTATAAAAAAAAAAAAAAAAAAAGAGGGGGGGGGG
GCCGGGGAAACCACTTTCCCCCTCAAGAGGGAGGGTTAAATTTATAAATT
TTGGGGGGGGGCGCCTGTTTTTTATACAGTCGCTTGGGGTGGGGGGGGGG
AAAAACCAGGCGGGGG
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