DY305474

Overview
NameDY305474
Unique NameDY305474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1266
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.052e-18
Identity = 75/223 (33.63%), Postives = 99/223 (44.39%), Query Frame = 3
Query:  312 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEF----LTVLRVFFGYTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPG 968
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF V  DA    SIE LR  G+D  + REEG+    F   M         +++WVTFH +YD  YL+K  T  +LP   + F      VL   +    M      + S L  G  T   E G    R G+AH  G
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRL--GLETLAHEFGL--NRVGTAHHAG 202          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.626e-15
Identity = 73/246 (29.67%), Postives = 99/246 (40.24%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFG-YTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNL 1007
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ REEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G + F         S L    G           R G AH  G ++  T R F  L
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234          
BLAST of DY305474 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.068e-15
Identity = 71/246 (28.86%), Postives = 99/246 (40.24%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFG-YTFMTSTHYAVLSDLVRGGGTSGSELGR*PGRAGSAHRPGWETF*TGRAFKNL 1007
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  EEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   +    G + F         S L    G           R G AH  G ++  T R F  L
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229          
The following BLAST results are available for this feature:
BLAST of DY305474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH2.052e-1833.63Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH1.626e-1529.67Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH8.068e-1528.86Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305474 ID=DY305474; Name=DY305474; organism=Citrus sinensis; type=EST; length=1266bp
GCAAGCAACATCTCCGCCCACCACCAGGAAACACAATAAGCTATCGGTAT
ATCTCTATATATATATATTCCTCTATTAGAACTTTTCACAAACACCTCTC
AACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCTC
ACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATC
ATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAG
CTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAAT
CCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCC
ATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTC
CACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTT
TGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTC
TCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAA
ATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCC
ACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAG
CGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGAT
GTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACA
GCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTG
CCCAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGGTA
CACATTTATGACGTCAACACATTATGCGGTTCTGTCAGACCTTGTACGGG
GGGGTGGGACGAGTGGCTCGGAACTTGGGAGGTGACCCGGGCGGGCGGGG
AGTGCCCACAGGCCCGGTTGGGAAACCTTCTGAACTGGCAGGGCCTTCAA
AAATTTAAGGGAGGGGAATTTCTTCCCCAACGGACGGGAAAAAAAGCCCG
GGGTATAATTGGAAGAAAAAAGGGAAAAAATTAATTTTTGGCCCAATAAA
ATAATTTTGAGATTTTTATAAAAAAAAAAAAAAAAAAAGAGGGGGGGGGG
GCCGGGGAAACCACTTTCCCCCTCAAGAGGGAGGGTTAAATTTATAAATT
TTGGGGGGGGGCGCCTGTTTTTTATACAGTCGCTTGGGGTGGGGGGGGGG
AAAAACCAGGCGGGGG
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