DY305473

Overview
NameDY305473
Unique NameDY305473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1261
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4B_PIG (RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
[Close]
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4B_MOUSE (RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
[Close]
BLAST of DY305473 vs. ExPASy Swiss-Prot
Match: RBM4B_HUMAN (RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   35 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 529
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
The following BLAST results are available for this feature:
BLAST of DY305473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RBM4B_PIG5.394e-1128.48RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2... [more]
RBM4B_MOUSE5.394e-1128.48RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE... [more]
RBM4B_HUMAN5.394e-1128.48RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AE04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305473 ID=DY305473; Name=DY305473; organism=Citrus sinensis; type=EST; length=1261bp
TTCACAGCTATCAATCGCCGCTTTCGAAGCTATGATGAGGCCTATCTTCT
GTGGGAACTTTGAGTATGATGCTCGTCAGTCTGATCTGGAGCGGCTTTTC
AGAAGATATGGAAAAGTTGATAGAGTGGATATGAAGTCTGGATTTGCATT
TATCTATATGGATGATGAGAGAGATGCTGAGGATGCAATTCGAGGGCTCG
ATCGAACTGAATTCGGTCGTAAGGGACGCAGACTTCGTGTTGAATGGACA
AAGCATGAACGAGGAATCAGAAGGCCTGGGGGGGGTTCAAGCGCAAGAAG
ACCTTCAACAAATACAAGACCTTCAAAGACCTTGTTTGTCATTAATTTTG
ATCCATATCATACGCGCACCAGGGACTTAGAAAGGCACTTTGAGCCATAT
GGAAAAATAATAAGTGTTAGGATCAGAAGGAATTTTGCATTTGTTCAATA
TGAAGTGCAGGAGGATGCCACCAGAGCATTGGATGCTACAAACATGAGCA
AGTTGACGGATCGAGTTATTTCAGTGGAATATGCAGTTCGTGATGACGAT
GACCGGAGAAATGGACACAGTCCTGATAGAAATCGTGATAGGTCACCAGA
TAGGGGTAGGAGGAGATCTCCAAGTCCCTATAGAAGGGAAAGAGGTAGTC
CTGATTATGGCCGTGGCTCTAGCCGAAGTCCTTACAGGAGAGAGAGGGGT
AGCCCTGATTATGGTCGTGTTAGAAGCCCAAGTCCCTATAGGAGGGATCG
GGGTAGCCCTGATTACGGTCGTAACTCCAGCCGCAGTCCTTACAAGAAAG
AGAGAGCTGCTATTGGTCATGGTCGAGGCCCTAGCCGTAGTCCCTATCGG
AGGGACAGAGGTAGTCCTGAGAATGGGTCTGGATCCCGTCCTATTCCTTA
TCGTAAGGGGGAACCTTTTCCTACCAAGGGTCGGGGCCCCAGCCGCCTTC
CTATGAAAAAAAGAGGGCCTAGTCCTGAAAAGGGTCGGGGAGGCAGCCCA
AGTCCCTTTAAAAAAGAGAGCCTTACCCCTGACAAGGGGCCGGTTCCCCA
TCCAATATTCATGCCCCGGACCCAGGGGAAACCCCCGGTTTTGAAAGGAA
CCGTAAACCCCCTATCATTAAAAAGAATCCCCACCTCTCTCCCCCCCCGC
CGCCAAGAAACGAACATGGGGGTTTCCCCACAAAAGACCCCTCGGGTCTC
CCCAAAAAATAGCAACGACGGCCCCCTTTTTTTACTCCCCCCCCCCCCAC
CCCCCCAACAT
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