DY305458 | Citrus Genome Database

Overview


Name	DY305458
Unique Name	DY305458
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1251

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AA_DICDI (Serine/threonine-protein phosphatase 2A catalytic subunit A OS=Dictyostelium discoideum GN=pho2A PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.221e-14
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            + PV+ PVT+CGDIHGQFHDL ++F++ GN
Sbjct:   42 VQPVRCPVTVCGDIHGQFHDLMELFKIGGN 71

HSP 2 Score: 48.9062 bits (115), Expect = 2.221e-14
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            IS L +CKPLSE +V+ LCEKA+EIL +ESNVQ
Sbjct:   11 ISILKECKPLSESEVRDLCEKAREILSKESNVQ 43

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2A1_ARATH (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.221e-14
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            + PVK PVT+CGDIHGQF+DL ++F++ GN
Sbjct:   42 VQPVKCPVTVCGDIHGQFYDLIELFRIGGN 71

HSP 2 Score: 50.0618 bits (118), Expect = 2.221e-14
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QLM+CKPL E  VK LC++AK IL+EE NVQ
Sbjct:   10 QIEQLMECKPLGEADVKILCDQAKAILVEEYNVQ 43

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2A2_ARATH (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.886e-14
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            + PVK PVT+CGDIHGQF+DL ++F++ GN
Sbjct:   42 VQPVKCPVTVCGDIHGQFYDLIELFRIGGN 71

HSP 2 Score: 49.6766 bits (117), Expect = 2.886e-14
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QLM+CKPLSE  V+ LC++A+ IL+EE NVQ
Sbjct:   10 QIEQLMECKPLSEADVRTLCDQARAILVEEYNVQ 43

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 3.510e-14
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            I QL +C+ LSE QV++LCEKAKEIL +ESNVQ
Sbjct:   14 IEQLNECRQLSESQVRSLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 3.510e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 3.510e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.596e-14
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            + QL +CK L+E QV+ LCEKAKEIL +ESNVQ
Sbjct:   14 VEQLNECKQLNENQVRTLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 7.596e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 7.596e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.596e-14
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            + QL +CK L+E QV+ LCEKAKEIL +ESNVQ
Sbjct:   14 VEQLNECKQLNENQVRTLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 7.596e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 7.596e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AB_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Mus musculus GN=Ppp2cb PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.596e-14
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            + QL +CK L+E QV+ LCEKAKEIL +ESNVQ
Sbjct:   14 VEQLNECKQLNENQVRTLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 7.596e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 7.596e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AB_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.596e-14
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            + QL +CK L+E QV+ LCEKAKEIL +ESNVQ
Sbjct:   14 VEQLNECKQLNENQVRTLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 7.596e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 7.596e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.596e-14
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1

Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            + QL +CK L+E QV+ LCEKAKEIL +ESNVQ
Sbjct:   14 VEQLNECKQLNENQVRTLCEKAKEILTKESNVQ 46

HSP 2 Score: 46.2098 bits (108), Expect = 7.596e-14
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V+ PVT+CGD+HGQFHDL ++F++ G
Sbjct:   48 VRCPVTVCGDVHGQFHDLMELFRIGG 73

HSP 3 Score: 24.2534 bits (51), Expect = 7.596e-14
Identity = 33/103 (32.04%), Postives = 44/103 (42.72%), Query Frame = 3

Query:  891 SNYWFRENSGNGGFICLKIYPLW-ALKGRDPRRFQIL*KNQGSAPKISVFGILL*RFRGEGARVHFWEKFFRTFF*TISP*AALGKNQKNIFCPAVGGGRPPT 1196
            +NY F  +  + G+  ++   L  ALK R P R  IL  N  S     V+G      R  G   + W K+F   F    P  AL   Q  IFC  + GG  P+
Sbjct:   78 TNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYG-NANVW-KYFTDLF-DYLPLTALVDGQ--IFC--LHGGLSPS 173

[Close]

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2A5_ARATH (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Arabidopsis thaliana GN=PP2A5 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.068e-13
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QLM+CK LSE +VK LCE AK IL+EE NVQ
Sbjct:   11 QIEQLMECKALSETEVKMLCEHAKTILVEEYNVQ 44

HSP 2 Score: 48.9062 bits (115), Expect = 1.068e-13
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            + PVK PVT+CGDIHGQF+DL ++F++ G+
Sbjct:   43 VQPVKCPVTVCGDIHGQFYDLIELFRIGGS 72

The following BLAST results are available for this feature:

BLAST of DY305458 vs. ExPASy Swiss-Prot

BLAST of DY305458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63


Match Name	E-value	Identity	Description
PP2AA_DICDI	2.221e-14	63.33	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2A1_ARATH	2.221e-14	63.33	Serine/threonine-protein phosphatase PP2A-1 cataly...	[more]
PP2A2_ARATH	2.886e-14	63.33	Serine/threonine-protein phosphatase PP2A-2 cataly...	[more]
PP2AA_CHICK	3.510e-14	69.70	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AB_RAT	7.596e-14	66.67	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AB_RABIT	7.596e-14	66.67	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AB_MOUSE	7.596e-14	66.67	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AB_HUMAN	7.596e-14	66.67	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2AB_BOVIN	7.596e-14	66.67	Serine/threonine-protein phosphatase 2A catalytic ...	[more]
PP2A5_ARATH	1.068e-13	70.59	Serine/threonine-protein phosphatase PP2A-5 cataly...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAM1AC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305458 ID=DY305458; Name=DY305458; organism=Citrus sinensis; type=EST; length=1251bp
GCTCTTCAACTAGTCTTAAAACGTTCTCATCCGCCTTTTTCTGCTCCATG
GAAGCCAACTGAAGTGAATTGTTCCTCAGGTCATTCTGTTGTCTGTCTGC
GTCAAGTTTTTGTCTCTCACGCTCAGTTAGTGCTTCACGCTTGTTCAATT
GTTTGCTCCAGGAATCAAGTTTCTTCTTCTTGGTCTCCAATTCACAACTG
AGCTTTTCTTGTTCTTCTAAGATCCTTCGAACATTATCACGAGCAAGCCG
CTGCATCTTCCTAGTTTCTTCAACAAAAGCATAGTGCAGTCTGTCTTTCT
CCTCAAGCATCCGGCTCAGAGACATAGTAGTCTCGTTGAACTTACACTGT
AGTTCACTGAGATCTTCATTCTTCATGTCAATCTTACTTGCAAGGTGTGC
AACCACATGAATTTTACTCTGAGCATCTTCCTGAACAATGTCCGAAACTG
TTCTTAACTTCCCTTCCTGGCGAAGATACTCCCCTATTGGTCCCTCGTGC
CGAATTCGGCACGAGGAATCCGGACACCGTTATCCCGATTCGGTTTAGGA
TTCGAGAATCAAAGATGGGCGCAAATTCGTTATCCACTGACACGACCACC
GACCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGA
ACCACAGGTTAAAGCATTATGCGAGAAGGCTAAAGAGATATTGATGGAAG
AAAGCAATGTACAGGCATCTTCTTTGGAACTAAATACTCTACTGTTGGTT
GCCTTCAGTTGGAAAATTATTAACTTGGTTCTGAAATCCCGGTCTCAATC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTCCAT
GATCTTGCCAAAATTTTTCAATTGGCGGGAAATGGCCAAATCCAATTACT
GGTTTAGGGAAAATAGTGGAAACGGGGGATTTATTTGTTTAAAAATTTAC
CCCCTATGGGCCCTGAAGGGGCGGGACCCTCGGCGATTTCAAATTCTTTA
AAAAAACCAGGGAAGCGCCCCAAAAATCTCAGTTTTTGGTATTCTCTTAT
AAAGGTTTCGGGGGGAAGGGGCGAGGGTCCATTTTTGGGAAAAATTTTTC
CGGACCTTTTTTTAAACCATTTCTCCTTAAGCGGCGCTTGGAAAAAACCA
AAAAAATATCTTTTGCCCCGCGGTGGGGGGGGGCCGCCCCCCCACCCGGA
TAAATAAAAACTATTGTAAATAAAAAAACAGGAAGAAACCATTTATTATA
C