DY305458 | Citrus Genome Database

Overview


Name	DY305458
Unique Name	DY305458
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1251

Libraries


Library Name	Type
SLH	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_XENLA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_PONAB (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Pongo abelii GN=PPP4C PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_MOUSE (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Mus musculus GN=Ppp4c PE=1 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_HUMAN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4C_BOVIN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus GN=PPP4C PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.392e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIEQLRRCELIKESEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 5.392e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP11_YEAST (Serine/threonine-protein phosphatase PP1-1 OS=Saccharomyces cerevisiae GN=SIT4 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 6.999e-12
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAG 880
            + PV++PVT+CGDIHGQFHDL ++F+ AG
Sbjct:   41 IQPVQTPVTVCGDIHGQFHDLLELFRTAG 69

HSP 2 Score: 41.5874 bits (96), Expect = 6.999e-12
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 1

Query:  610 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            E +  + +C+ L+E ++K LCE  KE+LMEESN+Q
Sbjct:    8 EWLETIKKCQALTENEMKQLCEMVKELLMEESNIQ 42

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4CA_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit A OS=Danio rerio GN=ppp4ca PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 6.999e-12
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQA 717
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ+
Sbjct:   14 QIEQLRRCELIKENEVKALCAKAREILVEESNVQS 48

HSP 2 Score: 44.669 bits (104), Expect = 6.999e-12
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAG 880
            V SPVT+CGDIHGQF+DL ++F++ G
Sbjct:   49 VDSPVTVCGDIHGQFYDLKELFRVGG 74

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2A_ACECL (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Acetabularia cliftonii PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.001e-12
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 2

Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAG 880
            + PVK PVT+CGDIHGQFHD+ ++F++ G
Sbjct:   42 VQPVKMPVTVCGDIHGQFHDMVELFKIGG 70

HSP 2 Score: 41.9726 bits (97), Expect = 7.001e-12
Identity = 20/35 (57.14%), Postives = 22/35 (62.86%), Query Frame = 1

Query:  610 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            E I  LMQCKPL E  VK L  KA+E+   E NVQ
Sbjct:    9 EWIEHLMQCKPLPEENVKELVAKAREVFSNEKNVQ 43

BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 7.001e-12
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1

Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            QI QL +C+ + E +VKALC KA+EIL+EESNVQ
Sbjct:   10 QIDQLRRCELIKENEVKALCAKAREILVEESNVQ 43

HSP 2 Score: 45.0542 bits (105), Expect = 7.001e-12
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  803 VKSPVTICGDIHGQFHDLAKIFQLAGN 883
            V SPVT+CGDIHGQF+DL ++F++ G+
Sbjct:   45 VDSPVTVCGDIHGQFYDLKELFRVGGD 71

The following BLAST results are available for this feature:

BLAST of DY305458 vs. ExPASy Swiss-Prot

BLAST of DY305458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63


Match Name	E-value	Identity	Description
PP4C_XENLA	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP4C_RAT	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP4C_PONAB	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP4C_MOUSE	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP4C_HUMAN	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP4C_BOVIN	5.392e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP11_YEAST	6.999e-12	65.52	Serine/threonine-protein phosphatase PP1-1 OS=Sacc...	[more]
PP4CA_DANRE	6.999e-12	62.86	Serine/threonine-protein phosphatase 4 catalytic s...	[more]
PP2A_ACECL	7.001e-12	62.07	Serine/threonine-protein phosphatase PP2A-1 cataly...	[more]
PP4CB_DANRE	7.001e-12	64.71	Serine/threonine-protein phosphatase 4 catalytic s...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAM1AC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY305458 ID=DY305458; Name=DY305458; organism=Citrus sinensis; type=EST; length=1251bp
GCTCTTCAACTAGTCTTAAAACGTTCTCATCCGCCTTTTTCTGCTCCATG
GAAGCCAACTGAAGTGAATTGTTCCTCAGGTCATTCTGTTGTCTGTCTGC
GTCAAGTTTTTGTCTCTCACGCTCAGTTAGTGCTTCACGCTTGTTCAATT
GTTTGCTCCAGGAATCAAGTTTCTTCTTCTTGGTCTCCAATTCACAACTG
AGCTTTTCTTGTTCTTCTAAGATCCTTCGAACATTATCACGAGCAAGCCG
CTGCATCTTCCTAGTTTCTTCAACAAAAGCATAGTGCAGTCTGTCTTTCT
CCTCAAGCATCCGGCTCAGAGACATAGTAGTCTCGTTGAACTTACACTGT
AGTTCACTGAGATCTTCATTCTTCATGTCAATCTTACTTGCAAGGTGTGC
AACCACATGAATTTTACTCTGAGCATCTTCCTGAACAATGTCCGAAACTG
TTCTTAACTTCCCTTCCTGGCGAAGATACTCCCCTATTGGTCCCTCGTGC
CGAATTCGGCACGAGGAATCCGGACACCGTTATCCCGATTCGGTTTAGGA
TTCGAGAATCAAAGATGGGCGCAAATTCGTTATCCACTGACACGACCACC
GACCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGA
ACCACAGGTTAAAGCATTATGCGAGAAGGCTAAAGAGATATTGATGGAAG
AAAGCAATGTACAGGCATCTTCTTTGGAACTAAATACTCTACTGTTGGTT
GCCTTCAGTTGGAAAATTATTAACTTGGTTCTGAAATCCCGGTCTCAATC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTCCAT
GATCTTGCCAAAATTTTTCAATTGGCGGGAAATGGCCAAATCCAATTACT
GGTTTAGGGAAAATAGTGGAAACGGGGGATTTATTTGTTTAAAAATTTAC
CCCCTATGGGCCCTGAAGGGGCGGGACCCTCGGCGATTTCAAATTCTTTA
AAAAAACCAGGGAAGCGCCCCAAAAATCTCAGTTTTTGGTATTCTCTTAT
AAAGGTTTCGGGGGGAAGGGGCGAGGGTCCATTTTTGGGAAAAATTTTTC
CGGACCTTTTTTTAAACCATTTCTCCTTAAGCGGCGCTTGGAAAAAACCA
AAAAAATATCTTTTGCCCCGCGGTGGGGGGGGGCCGCCCCCCCACCCGGA
TAAATAAAAACTATTGTAAATAAAAAAACAGGAAGAAACCATTTATTATA
C