DY305458

Overview
NameDY305458
Unique NameDY305458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1251
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: FYPP1_ARATH (Phytochrome-associated serine/threonine protein phosphatase 1 OS=Arabidopsis thaliana GN=FYPP1 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.354e-11
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            + PV SPVT+CGDIHGQFHDL K+FQ  G+
Sbjct:   38 VQPVNSPVTVCGDIHGQFHDLMKLFQTGGH 67

HSP 2 Score: 36.965 bits (84), Expect = 3.354e-11
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  616 ISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            IS++   + LSE +++ LCE  KEIL+EESNVQ
Sbjct:    7 ISKVKDGQHLSEDELQLLCEYVKEILIEESNVQ 39
[Close]
BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.348e-11
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:  788 PGLNPVKSPVTICGDIHGQFHDLAKIFQLAGN 883
            P +  V++P+TICGDIHGQFHDL ++FQ+ GN
Sbjct:   48 PNIIQVRAPLTICGDIHGQFHDLIELFQIGGN 79

HSP 2 Score: 37.3502 bits (85), Expect = 4.348e-11
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  613 QISQLMQCKPLSEPQVKALCEKAKEILMEESNV 711
            QI++L Q + L+E ++K+LC KAKEIL +E N+
Sbjct:   18 QIAKLKQGQILTESEIKSLCIKAKEILSDEPNI 50
[Close]
BLAST of DY305458 vs. ExPASy Swiss-Prot
Match: PPE1_SCHPO (Serine/threonine-protein phosphatase ppe1 OS=Schizosaccharomyces pombe GN=ppe1 PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.354e-11
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:  794 LNPVKSPVTICGDIHGQFHDLAKIFQLAG 880
            + PV++PVT+CGDIHGQF+DL ++F++ G
Sbjct:   39 IQPVRTPVTVCGDIHGQFYDLLELFRVGG 67

HSP 2 Score: 41.5874 bits (96), Expect = 4.354e-11
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:  610 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQ 714
            E I+ + +CK L E Q+K LCE  K ILMEESN+Q
Sbjct:    6 EWIATVRKCKYLPEHQLKRLCEMVKVILMEESNIQ 40
The following BLAST results are available for this feature:
BLAST of DY305458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
FYPP1_ARATH3.354e-1170.00Phytochrome-associated serine/threonine protein ph... [more]
PP2A3_PARTE4.348e-1162.50Serine/threonine-protein phosphatase PP2A catalyti... [more]
PPE1_SCHPO4.354e-1158.62Serine/threonine-protein phosphatase ppe1 OS=Schiz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305458 ID=DY305458; Name=DY305458; organism=Citrus sinensis; type=EST; length=1251bp
GCTCTTCAACTAGTCTTAAAACGTTCTCATCCGCCTTTTTCTGCTCCATG
GAAGCCAACTGAAGTGAATTGTTCCTCAGGTCATTCTGTTGTCTGTCTGC
GTCAAGTTTTTGTCTCTCACGCTCAGTTAGTGCTTCACGCTTGTTCAATT
GTTTGCTCCAGGAATCAAGTTTCTTCTTCTTGGTCTCCAATTCACAACTG
AGCTTTTCTTGTTCTTCTAAGATCCTTCGAACATTATCACGAGCAAGCCG
CTGCATCTTCCTAGTTTCTTCAACAAAAGCATAGTGCAGTCTGTCTTTCT
CCTCAAGCATCCGGCTCAGAGACATAGTAGTCTCGTTGAACTTACACTGT
AGTTCACTGAGATCTTCATTCTTCATGTCAATCTTACTTGCAAGGTGTGC
AACCACATGAATTTTACTCTGAGCATCTTCCTGAACAATGTCCGAAACTG
TTCTTAACTTCCCTTCCTGGCGAAGATACTCCCCTATTGGTCCCTCGTGC
CGAATTCGGCACGAGGAATCCGGACACCGTTATCCCGATTCGGTTTAGGA
TTCGAGAATCAAAGATGGGCGCAAATTCGTTATCCACTGACACGACCACC
GACCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGA
ACCACAGGTTAAAGCATTATGCGAGAAGGCTAAAGAGATATTGATGGAAG
AAAGCAATGTACAGGCATCTTCTTTGGAACTAAATACTCTACTGTTGGTT
GCCTTCAGTTGGAAAATTATTAACTTGGTTCTGAAATCCCGGTCTCAATC
CTGTGAAAAGTCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTCCAT
GATCTTGCCAAAATTTTTCAATTGGCGGGAAATGGCCAAATCCAATTACT
GGTTTAGGGAAAATAGTGGAAACGGGGGATTTATTTGTTTAAAAATTTAC
CCCCTATGGGCCCTGAAGGGGCGGGACCCTCGGCGATTTCAAATTCTTTA
AAAAAACCAGGGAAGCGCCCCAAAAATCTCAGTTTTTGGTATTCTCTTAT
AAAGGTTTCGGGGGGAAGGGGCGAGGGTCCATTTTTGGGAAAAATTTTTC
CGGACCTTTTTTTAAACCATTTCTCCTTAAGCGGCGCTTGGAAAAAACCA
AAAAAATATCTTTTGCCCCGCGGTGGGGGGGGGCCGCCCCCCCACCCGGA
TAAATAAAAACTATTGTAAATAAAAAAACAGGAAGAAACCATTTATTATA
C
back to top