DY305457

Overview
NameDY305457
Unique NameDY305457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1270
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.115e-11
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.115e-11
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.115e-11
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.115e-11
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.293e-11
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
The following BLAST results are available for this feature:
BLAST of DY305457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CAIC_SHISS7.115e-1130.15Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSE7.115e-1130.15Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS7.115e-1130.15Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO247.115e-1130.15Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSM9.293e-1130.15Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305457 ID=DY305457; Name=DY305457; organism=Citrus sinensis; type=EST; length=1270bp
GGTTGGATTTTACCAGGGGGATAATATGAAACTGATGGATGATCTGGCAG
CTCTAAGACCTACTGTATTCTGCAGTGTTCCTCGGCTGTACAATAGAATA
TATGCTGGCATCACAAGTGCCGTAAGAACATCTGGTGGACTAAGGGAGAG
ACTGTTCAATGCTGCCTACAATGCTAAGAAGCAAGCGATGTTGAGCGGTA
AGAATCCGTCTCCCATGTGGGACAGATTGGTATTCAACAAGATAAAGGAC
AAACTTGGAGGACGAGTACGTTTTATGGGTTCTGGTGCTTCTCCCTTGTC
TCCTGATGTCTTGGATTTCTTAAAAATCTGCTTTGGTGGGCGTGTAACTG
AAGGATATGGAATGACTGAGACTTCATGTCTTATAAGTCAGCTGGATGAG
GGTGACAACCTTTCTGGTCATGTTGGCTCTCCAAATGCAGCATGTGAGAT
AAAGCTTGTGGATGTCCCAGAAATGAACTACACATCTGAGGATCAACCAT
GTCCTCGCGGAGAAATCTGTGTTAGAGGTCCCCTAATTTTCAAGGGCTAT
TATAAAGATGAAATCCAGACAAAAGAAGTTATTGATGAAGATGGATGGTT
TCATACTGGAGATATAGGAATGTGGATACCCGGTGGTCGTCTAAAGATTA
TTGATAGGAAGAAGAATATTTTTAAGTTAGCGCAGGGAGAGTACATAGCT
GCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAGTTTGTTGGTCAGTG
CTTTGTCTATGGTGACAGCTTCAATTCGGCTTTGGTAGCCATTGTCTCAT
TGGACCAAGATGCTTTTAAAGCCTGGGCTGCATCTGAAAGCATTCAATAT
GAAAACTTAGAGCACTTTTGCAATGACCCAAGGGCGAGGGCTGCTGTGTT
GGCTGATATGGATTCTCCTAGAAAAAAAACCTCATTTGAAAGGCTTTGAT
TTTTTAAAACGGTGACTTTGGTGCCTCAACCCTTCCCAGTGGAAAAGGGA
CTGCTCCCTCCCACATTTAAAAAAAAAAAACCACAACCAAAACAATCTTT
TTCAAAAACCCATTTCGAAATATTATGGTTAACTTTTTTAAATTTTTATT
CCCTCCCCAAAACATTTGTGGAAAAACATCCAAAATCCCCAAAGGGTGTA
AAAATTAAAAAGGGTTTTTTTAAAAAATTTTTTTTTTTTACAAAATATTC
CCCCCCCAAAAAAAAAACAAAAACCGCGGGGGGGTGGGGGGGGCACTTCT
TTTCTTTTTTTTTTTTGTTT
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