DY305457

Overview
NameDY305457
Unique NameDY305457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1270
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.298e-16
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETS-----CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 715
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       CL    +  D  SG  G+     E+K+VD         +QP   GEIC+RG  I KGY  D   T   I+++GW HTGDIG       L I+DR K + K  +G  +A  ++E
Sbjct:  305 VRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP---GEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKY-KGFQVAPAELE 456          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.307e-16
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGR--VTEGYGMTETSCLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 757
            +R + SGA+PLS +V D +K  F GR  + +GYG TE S     +  G   SG  G   PN   +I   +  E     E     +GEIC++GP +  GYY +E  T EVID+DG+  TGDIG     G   I+DR K + K    +   AE    + +  K    C V
Sbjct:  316 LRTLFSGAAPLSSEVEDLIKERFKGRLVIKQGYGATELSPACFVIPSGLVKSGSAGILLPNQLAKIISPETGENLGMGE-----KGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVV 478          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACBG2_XENLA (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopus laevis GN=acsbg2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.625e-16
Identity = 89/318 (27.99%), Postives = 146/318 (45.91%), Query Frame = 2
Query:    8 FYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML---SGKNPSPMW----DRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN-VYAKCKFVGQCFVYGD--SFNSALVAI---VSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADM 910
            F Q D +K  L   L  +RPT F  VPR++ ++   + +    S  ++ ++   A     +  L   +G  P PM     ++LVF K++  LG  R     +GA+P++ D L+F  +     V E YGM+E+S   +  L +   ++   G   + C+ K +  P+ + +        GEI   G  +F GY   E +T E +DE+GW H+GDIG     G L I  R K +   A GE I     E+ V  +   +    + GD   F S L+ +   V+ D    +     E+IQ      FC    ++A +++D+
Sbjct:  355 FAQPDALKGSLAITLREVRPTAFMGVPRVWEKMQEKMKAVGAKSSTIKRKMATWAKGVGLETNLKKMNGSTPHPMKYHVANKLVFKKVRKALGLDRCTKCYTGAAPITKDTLEFF-LSLNIPVYELYGMSESSGPHTISLPDAFRITS-CGKVISGCKTK-IHQPDSDGS--------GEILFWGRHVFMGYLNMEDKTHESLDEEGWLHSGDIGKHDENGFLYITGRIKELIITAGGENIPPVPTEDAVKEQVPIISNAMLIGDKKKFLSMLLTLKCNVNADTGEPEDELTPEAIQ------FCRQIGSKATLVSDI 655          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.346e-16
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            VR + SGA+PL  ++ D +   F   ++ +GYGMTE   +++       +     SG  G+     E+K++D    +    ++P   GEIC+RG  I KGY  D + T   ID+DGW HTGD+G       L I+DR K + K  +G  +A  ++E++
Sbjct:  316 VRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKP---GEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKY-KGFQVAPAELESL 469          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACBG1_MACFA (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Macaca fascicularis GN=ACSBG1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 9.594e-16
Identity = 85/313 (27.16%), Postives = 133/313 (42.49%), Query Frame = 2
Query:    2 VGFYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS--GKNPSP----MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN-VYAKCKFVGQCFVYGDSFNSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADM 910
            V F + D +K  L++ L  + PT    VPR++ +I   I      SG +R ++   A +   +  L+  G +  P    + D LV  K++  LG  + +    GA+P++ +   F  +    R+  GYG++ETS         +      G     C +KLV     N  +E      GEIC+ G  IF GY   E +T E IDE+GW HTGD G     G L I  R K +   A GE +    IE  V  +   +    + G      L  +++L        +       E    FC    +RA  ++++
Sbjct:  348 VCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQNLTCPGSDLKPFTTRLADYLVLAKVRQALGFAKCQKNFYGAAPMTAETQHFF-LGLNIRLYAGYGLSETSGPHFMSSPCNYRLYSSGKLVPGCRVKLV-----NQDTEGI----GEICLWGRTIFMGYLNMEDKTCEAIDEEGWLHTGDAGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISNAMLIGTDQRKFLSMLLTLKCTLDPDTSDPTDNLTEQAVEFCQRVGSRATTVSEI 650          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.253e-15
Identity = 65/213 (30.52%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETS-----CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY---GDSFNSALVAIV------SLDQDAFKAWAASESIQYENL 859
            +R + SGA+P+  ++ D +       V  +GYGMTE       C+    +     SG  G+     E+K+VD         +QP   GEIC+RG  I KGY  +   T++ ID+DGW HTGDIG       + I+DR K + K  +G  +A  ++E +      V    V     DS     VA V       +  D  K + A + + Y+ L
Sbjct:  298 IRMVISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQP---GEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKY-KGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQVVFYKRL 506          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.253e-15
Identity = 59/159 (37.11%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTE-----TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 715
            +R + SG +PL  ++ D L+  F   ++ +GYGMTE     T  L    +  D   G  G+     E+K+VD PE  ++      PR   GEIC+RG  I KGY  D   T+  ID+DGW HTGDIG       L I+DR K + K  +G  +A  ++E
Sbjct:   52 IRVLKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPVLTMSLAFAKEPIDVKPGACGTVVRNAEMKIVD-PETGHS-----LPRNQSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 203          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  215 MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +++ L+ NK   +L    +     G  P+   V +      G  + EGYG+TE + L+S    + D  SG +G P  + E KLVD  +    +E  P   GE+CV+GP +  GY++    T E+I +DGW HTGDI +    G L+I+DRKK++  L  G  +   +IE+V
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLVDDDD----NEVAPGEAGELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKDMI-LVSGFNVYPNEIEDV 473          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  215 MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +++ L+ NK   +L    +     G  P+   V +      G  + EGYG+TE + L+S    + D  SG +G P  + E KLVD  +    +E  P   GE+CV+GP +  GY++    T E+I +DGW HTGDI +    G L+I+DRKK++  L  G  +   +IE+V
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLVDDDD----NEVAPGEAGELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKDMI-LVSGFNVYPNEIEDV 473          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACBG1_BOVIN (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus GN=ACSBG1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 84/328 (25.61%), Postives = 146/328 (44.51%), Query Frame = 2
Query:    2 VGFYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP------SPMWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN-VYAKCKFVGQCFVYGD--SFNSALVAI-VSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMDSPRKKTSFERL 946
            V F + D +K  L++ L  + PT    VPR++ +I   I      SG +  ++   A +   +  L+  +       + + D LV  K++  LG  + +    GA+P++ +   F  +    R+  GYG++ETS         +      G     C++KLV+               GEIC+ G  IF GY   E +T E ID +GW HTGD G     G L I  R K +   A GE +    IE  V  +   +    + GD   F S L+ +  +LD D F+    ++++  + +E FC    ++A  ++++   + +  ++ +
Sbjct:  331 VCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMEQIQEVAAQSGFIWRKMLLWAMSVTLEQNLTCPSSDLKPFTTRLADYLVLAKVRQALGFAKCQKNFYGAAPMTAETQHFF-LGLNIRLYAGYGLSETSGPHFMSSPYNYRLYSSGKVVPGCQVKLVNEDAEGI---------GEICLWGRTIFMGYLNMEDKTCEAIDAEGWLHTGDTGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKTELPIIRNAMLIGDQRKFLSMLLTLKCTLDPDTFE---PTDNLTEQAVE-FCQRVGSKATTVSEVVGKKDEAVYQAI 644          
The following BLAST results are available for this feature:
BLAST of DY305457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
4CL1_SOLTU3.298e-1636.544-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL1_DICDI4.307e-1636.31Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
ACBG2_XENLA5.625e-1627.99Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopu... [more]
4CL2_ARATH7.346e-1633.544-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
ACBG1_MACFA9.594e-1627.16Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Macaca... [more]
4CL5_ORYSJ1.253e-1530.52Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_SOYBN1.253e-1537.114-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
LCFA_SALTY1.637e-1534.50Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI1.637e-1534.50Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
ACBG1_BOVIN1.637e-1525.61Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305457 ID=DY305457; Name=DY305457; organism=Citrus sinensis; type=EST; length=1270bp
GGTTGGATTTTACCAGGGGGATAATATGAAACTGATGGATGATCTGGCAG
CTCTAAGACCTACTGTATTCTGCAGTGTTCCTCGGCTGTACAATAGAATA
TATGCTGGCATCACAAGTGCCGTAAGAACATCTGGTGGACTAAGGGAGAG
ACTGTTCAATGCTGCCTACAATGCTAAGAAGCAAGCGATGTTGAGCGGTA
AGAATCCGTCTCCCATGTGGGACAGATTGGTATTCAACAAGATAAAGGAC
AAACTTGGAGGACGAGTACGTTTTATGGGTTCTGGTGCTTCTCCCTTGTC
TCCTGATGTCTTGGATTTCTTAAAAATCTGCTTTGGTGGGCGTGTAACTG
AAGGATATGGAATGACTGAGACTTCATGTCTTATAAGTCAGCTGGATGAG
GGTGACAACCTTTCTGGTCATGTTGGCTCTCCAAATGCAGCATGTGAGAT
AAAGCTTGTGGATGTCCCAGAAATGAACTACACATCTGAGGATCAACCAT
GTCCTCGCGGAGAAATCTGTGTTAGAGGTCCCCTAATTTTCAAGGGCTAT
TATAAAGATGAAATCCAGACAAAAGAAGTTATTGATGAAGATGGATGGTT
TCATACTGGAGATATAGGAATGTGGATACCCGGTGGTCGTCTAAAGATTA
TTGATAGGAAGAAGAATATTTTTAAGTTAGCGCAGGGAGAGTACATAGCT
GCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAGTTTGTTGGTCAGTG
CTTTGTCTATGGTGACAGCTTCAATTCGGCTTTGGTAGCCATTGTCTCAT
TGGACCAAGATGCTTTTAAAGCCTGGGCTGCATCTGAAAGCATTCAATAT
GAAAACTTAGAGCACTTTTGCAATGACCCAAGGGCGAGGGCTGCTGTGTT
GGCTGATATGGATTCTCCTAGAAAAAAAACCTCATTTGAAAGGCTTTGAT
TTTTTAAAACGGTGACTTTGGTGCCTCAACCCTTCCCAGTGGAAAAGGGA
CTGCTCCCTCCCACATTTAAAAAAAAAAAACCACAACCAAAACAATCTTT
TTCAAAAACCCATTTCGAAATATTATGGTTAACTTTTTTAAATTTTTATT
CCCTCCCCAAAACATTTGTGGAAAAACATCCAAAATCCCCAAAGGGTGTA
AAAATTAAAAAGGGTTTTTTTAAAAAATTTTTTTTTTTTACAAAATATTC
CCCCCCCAAAAAAAAAACAAAAACCGCGGGGGGGTGGGGGGGGCACTTCT
TTTCTTTTTTTTTTTTGTTT
back to top