DY305457

Overview
NameDY305457
Unique NameDY305457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1270
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETS-----CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 715
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       CL    +  +  SG  G+     E+K+VD    N    +Q    GEIC+RG  I KGY  D   T   ID++GW +TGDIG       L I+DR K + K  +G  +A  ++E
Sbjct:  302 VRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQS---GEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 453          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.137e-15
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  215 MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +++ L+ NK   +L    +     G  P+   V +      G  + EGYG+TE + L+S    + D  SG +G P  + E KLVD  + N  S  QP   GE+CVRGP +  GY++    T E+I ++GW HTGDI +    G L+I+DRKK++  L  G  +   +IE+V
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDD-NEVSPGQP---GELCVRGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDV 473          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.137e-15
Identity = 58/158 (36.71%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETSCLISQLDEGDN----LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 715
            VR M SGA+ L  ++ D +++ F   +  +GYGMTE+  +   L    N     SG  G+     E+K+VD      T      PR   GEICVRG  + KGY  D   T   ID+DGW HTGDIG       + I+DR K + K  +G  +A  ++E
Sbjct:  331 VRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTESGTVAKSLAFAKNPFKTKSGACGTVIRNAEMKVVD------TETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKF-KGYQVAPAELE 481          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: BGML_DROME (Long-chain-fatty-acid--CoA ligase bubblegum-like OS=Drosophila melanogaster GN=CG4500 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.646e-15
Identity = 78/258 (30.23%), Postives = 115/258 (44.57%), Query Frame = 2
Query:    2 VGFYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSA---VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL------VFNKIKDKLG-GRVRFMGSGASPLSPDVLDF---LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 730
            V F   D +K  L+      RPT    VPR++ ++   + +A    R    L      AA    +  +++GK+PS   +        V   I++ +G    R   +G +P S ++  F   L I  G    E YGM+ETS  I+   +  NL     S   ACE   + + E +   +      GEI +RG L+F GY     +T+E + EDGW H+GD+G   P G L I  R K +   A GE I    IE +  K
Sbjct:  287 VTFADKDALKGTLIKTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEHQTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEELKQFFLGLDIALG----ECYGMSETSGAITLNVDISNLY----SAGQACEGVTLKIHEPDCNGQ------GEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKELIITAGGENIPPVHIEELIKK 530          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.646e-15
Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-----CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 676
            +R + SGA+P+  D+ D F+       + +GYGMTE       CL    +  +  SG  G+     E+K+VD         +Q    GEIC+RG  I KGY  D   TK  ID+ GW HTGDIG       + I+DR K I K
Sbjct:  311 IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFEVKSGSCGTVVRNAELKIVDPDTGATLGRNQS---GEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIK 450          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.219e-15
Identity = 59/168 (35.12%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGR--VTEGYGMTETSCLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 757
            +R +  GA+PL  ++ D +K  F GR  + +GYG TE S        G   SG  G+  PN   +I   +  E     E     +GEIC++GP +  GYY +E  T EVID+DG+  TGDIG     G   IIDR K + K    +   AE    + +  K    C V
Sbjct:  316 LRTLFCGAAPLGSEIEDLIKERFKGRLVIKQGYGATELSPCCFVTPNGLVKSGSSGTLLPNLLAKIISSETGENLGMGE-----KGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDRSKELIKCKGFQVPPAELEALLLSHPKVADACVV 478          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.122e-15
Identity = 65/178 (36.52%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  248 DKLGGRVR--FMGSGASPLSPDVLDFLKICFGGR--VTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 763
            D+  G +R   +G G +PLS      L+ C   R  V + YGMTET   I+ L    ++   G  G P  A  IK+    E N T E QP   GEI V+GP + KGY K+E   K+  + DGWF TGDIG +   G L ++DR+ ++  ++ GE I   ++E V      V +  V G
Sbjct:  252 DRCPGSLRCLLLGGGPAPLS-----LLEECKRKRLPVVQSYGMTETCSQIATLAPEYSIEKLGSAGKPLFASSIKI----EKNGT-ECQPGEHGEITVKGPTVMKGYLKNEAANKDSFN-DGWFKTGDIGYFDDDGFLYVLDRRSDLI-ISGGENIYPAEVEAVLLSHPNVAEAGVKG 417          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.122e-15
Identity = 64/213 (30.05%), Postives = 95/213 (44.60%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETS-----CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD---SFNSALVAIV------SLDQDAFKAWAASESIQYENL 859
            +R + SGA+PL  ++ + L+      V  +GYGMTE       CL          SG  G+     E+K+VD         +QP   GEIC+RG  I KGY  DE  T   ID +GW HTGD+G       + I+DR K + K  +G  +   ++E +      +    V      +     VA V       L ++A K + A + + Y+ L
Sbjct:  320 IRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTEAGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQP---GEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKY-KGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRL 528          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.061e-14
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  263 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 763
            R   +G G +P S  +L+  K+     V + YGMTETS  I  L   D L   G  G P    ++K+         +E+ P   GEI V+GP++ KGYYK     KEV  E+ W HTGD+G     G L ++DR+ ++  ++ GE I   +IENV  + + + +  V G
Sbjct:  261 RCMLLGGGPAPKS--LLEQAKLK-NIPVFQSYGMTETSSQIVTLTPEDALKKIGSAGKPLFPAQLKIAH-------NENNPNQIGEILVKGPMVTKGYYKRAETNKEVF-ENNWLHTGDMGYLDEQGYLYVVDRRNDLI-ISGGENIYPSEIENVLVQIEGIEEAGVKG 417          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACBG1_MOUSE (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus musculus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.061e-14
Identity = 83/328 (25.30%), Postives = 146/328 (44.51%), Query Frame = 2
Query:    2 VGFYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN------PSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN-VYAKCKFVGQCFVYGD--SFNSALVAI-VSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMDSPRKKTSFERL 946
            V F   D +K  L++ L  + PT    VPR++ +I   I      SG +R ++   A +   +  L+  +       S + D LV  +++  LG  + +    GA+P++ +   F  +    R+  GYG++E++         +      G     C +KLV+               GEIC+ G  IF GY   E +T E ID +GW HTGD+G     G L I  R K +   A GE +    IE  V  +   +    + GD   F S L+ +  +LD +  +    ++S+  + +E FC    ++A+ ++++   R +  ++ +
Sbjct:  345 VCFADPDALKGTLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQNLTCPSNDLKPFTSRLADYLVLARVRQALGFAKCQKNFYGAAPMTAETQRFF-LGLNIRLYAGYGLSESTGPHFMSSPYNYRLYSSGRVVPGCRVKLVNQDADGI---------GEICLWGRTIFMGYLNMEDKTCEAIDSEGWLHTGDMGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIGDQRKFLSMLLTLKCTLDPETSE---PTDSLTEQAVE-FCQRVGSKASTVSEIVGQRDEAVYQAI 658          
The following BLAST results are available for this feature:
BLAST of DY305457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
4CL2_TOBAC1.637e-1535.904-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
LCFA_ECO572.137e-1535.67Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
4CL4_ARATH2.137e-1536.714-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
BGML_DROME3.646e-1530.23Long-chain-fatty-acid--CoA ligase bubblegum-like O... [more]
4CL4_ORYSJ3.646e-1537.06Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL3_DICDI6.219e-1535.12Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
MENE_BACLD8.122e-1536.522-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
4CL2_SOYBN8.122e-1530.054-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
MENE_OCEIH1.061e-1434.912-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
ACBG1_MOUSE1.061e-1425.30Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305457 ID=DY305457; Name=DY305457; organism=Citrus sinensis; type=EST; length=1270bp
GGTTGGATTTTACCAGGGGGATAATATGAAACTGATGGATGATCTGGCAG
CTCTAAGACCTACTGTATTCTGCAGTGTTCCTCGGCTGTACAATAGAATA
TATGCTGGCATCACAAGTGCCGTAAGAACATCTGGTGGACTAAGGGAGAG
ACTGTTCAATGCTGCCTACAATGCTAAGAAGCAAGCGATGTTGAGCGGTA
AGAATCCGTCTCCCATGTGGGACAGATTGGTATTCAACAAGATAAAGGAC
AAACTTGGAGGACGAGTACGTTTTATGGGTTCTGGTGCTTCTCCCTTGTC
TCCTGATGTCTTGGATTTCTTAAAAATCTGCTTTGGTGGGCGTGTAACTG
AAGGATATGGAATGACTGAGACTTCATGTCTTATAAGTCAGCTGGATGAG
GGTGACAACCTTTCTGGTCATGTTGGCTCTCCAAATGCAGCATGTGAGAT
AAAGCTTGTGGATGTCCCAGAAATGAACTACACATCTGAGGATCAACCAT
GTCCTCGCGGAGAAATCTGTGTTAGAGGTCCCCTAATTTTCAAGGGCTAT
TATAAAGATGAAATCCAGACAAAAGAAGTTATTGATGAAGATGGATGGTT
TCATACTGGAGATATAGGAATGTGGATACCCGGTGGTCGTCTAAAGATTA
TTGATAGGAAGAAGAATATTTTTAAGTTAGCGCAGGGAGAGTACATAGCT
GCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAGTTTGTTGGTCAGTG
CTTTGTCTATGGTGACAGCTTCAATTCGGCTTTGGTAGCCATTGTCTCAT
TGGACCAAGATGCTTTTAAAGCCTGGGCTGCATCTGAAAGCATTCAATAT
GAAAACTTAGAGCACTTTTGCAATGACCCAAGGGCGAGGGCTGCTGTGTT
GGCTGATATGGATTCTCCTAGAAAAAAAACCTCATTTGAAAGGCTTTGAT
TTTTTAAAACGGTGACTTTGGTGCCTCAACCCTTCCCAGTGGAAAAGGGA
CTGCTCCCTCCCACATTTAAAAAAAAAAAACCACAACCAAAACAATCTTT
TTCAAAAACCCATTTCGAAATATTATGGTTAACTTTTTTAAATTTTTATT
CCCTCCCCAAAACATTTGTGGAAAAACATCCAAAATCCCCAAAGGGTGTA
AAAATTAAAAAGGGTTTTTTTAAAAAATTTTTTTTTTTTACAAAATATTC
CCCCCCCAAAAAAAAAACAAAAACCGCGGGGGGGTGGGGGGGGCACTTCT
TTTCTTTTTTTTTTTTGTTT
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