DY305457

Overview
NameDY305457
Unique NameDY305457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1270
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.385e-14
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  215 MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +++ L+ NK   +L    +     G  P+   V +      G  + EGYG+TE + L+S    + D  SG +G P  + E KLVD  +    +E  P   GE+CV+GP +  GY++    T E+I ++GW HTGDI +    G L+I+DRKK++  L  G  +   +IE+V
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDD----NEVPPGQPGELCVKGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDV 473          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.385e-14
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  215 MWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +++ L+ NK   +L    +     G  P+   V +      G  + EGYG+TE + L+S    + D  SG +G P  + E KLVD  +    +E  P   GE+CV+GP +  GY++    T E+I ++GW HTGDI +    G L+I+DRKK++  L  G  +   +IE+V
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDD----NEVPPGQPGELCVKGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDV 473          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.809e-14
Identity = 65/212 (30.66%), Postives = 98/212 (46.23%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETSCLISQ-LDEGDN----LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA-------LVAIVSLDQDAFKAWAASESIQYENL 859
            VR + SGA+PL  ++ D L+  F   +  +GYGMTE   +++  L    N     SG  G+     +IK++D      T E  P  + GEIC+RGP I KGY  D   T   IDE+GW HTGD+        + I+DR K I K  +G  +A  ++E +      +    V       A       +V    + +   K + A + I Y+ +
Sbjct:  302 VRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTE----TGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKY-KGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKSSEISEQEIKEFVAKQVIFYKKI 508          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.086e-14
Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            VRF+ SGA+PL  ++ D L+      +  +GYGMTE   ++S       +     SG  G+     E+K+V +        +QP   GEIC+RG  I K Y  D   T   IDE+GW HTGDIG       + I+DR K + K  +G  +   ++E++
Sbjct:  326 VRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQP---GEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKF-KGFQVPPAELESL 479          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.031e-14
Identity = 64/208 (30.77%), Postives = 98/208 (47.12%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVT-EGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVDVPEMNYT-SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSLDQDAFKAWAASESIQYENLEHF 868
            +R + SGA+PL  ++ D L+      +  +GYGMTE   ++S       +     SG  G+     E+K+VD P+  ++   + P   GEIC+RGP I KGY  D   T   ID +GW HTGDIG       + I+DR K + K  +G  +   ++E++      +    V     + A    V     AF   AA   I  E+++ F
Sbjct:  332 IRIVLSGAAPLGKELEDALRARLPQAIFGQGYGMTEAGPVLSMCPAFAKEPTPAKSGSCGTVVRNAELKVVD-PDTGFSLGRNLP---GEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKF-KGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPV-----AFVVRAADSDITEESIKEF 529          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14
Identity = 56/179 (31.28%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  209 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGH-------VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            +P+ D    +K+K      ++ + + A+PL+P++L   +  F   +V E YG+TE SC+   L  GD   G        VG      E+K +D P+   +        GE+CVR   + +GY+ ++ +T + IDE GW HTGDIG     G + I+DR K + K  +G  +A  ++E +
Sbjct:  289 NPIVDEFDLSKLK------LQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCIT--LTHGDPEKGQGIAKRNSVGFILPNLEVKFID-PDTGRSLPKNTS--GELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 455          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.980e-14
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  275 MGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 763
            + SG +PLS ++ + +K  F    V +GYG+TET+  +    + D   G  G       +K+VD           P   GE+  +G +I K YY +E  TK +I++DGW  +GDI  +   G   I+DR K++ K  +G  +A  +IE +  +  ++    V G
Sbjct:  311 IASGGAPLSKEIGEMVKKRFKLNFVRQGYGLTETTSAVLITPDTDVRPGSTGKIVPFHAVKVVDPTTGKILG---PNETGELYFKGDMIMKSYYNNEEATKAIINKDGWLRSGDIAYYDNDGHFYIVDRLKSLIKY-KGYQVAPAEIEGILLQHPYIVDAGVTG 470          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACBG1_RAT (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus norvegicus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.980e-14
Identity = 72/265 (27.17%), Postives = 114/265 (43.02%), Query Frame = 2
Query:    2 VGFYQGDNMK--LMDDLAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN------PSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN-VYAKCKFVGQCFVYGD 766
            V F   D +K  L++ L  + PT    VPR++ +I   I      SG +R ++   A +   +  L+  +       S + D LV  +++  LG  + +    GA+P++ +   F  +    R+  GYG++E++         +      G     C +KLV+               GEIC+ G  IF GY   E +T E ID +GW HTGD+G     G L I  R K +   A GE +    IE  V  +   +    + GD
Sbjct:  345 VCFADPDALKGTLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQNLTCPSNDLKPFTSRLADYLVLARVRQALGFAKCQKNFYGAAPMTAETQRFF-LGLNIRLYAGYGLSESTGPHFMSSPYNYRLYSSGRVVPGCRVKLVNQDADGI---------GEICLWGRTIFMGYLNMEDKTHEAIDSEGWLHTGDMGRLDDDGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIGD 599          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: MENE_BACC0 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH820) GN=menE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.173e-13
Identity = 73/239 (30.54%), Postives = 103/239 (43.10%), Query Frame = 2
Query:  263 RVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKL----VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMDSPRKKTSFERL 946
            R   +G G +P        L+ C   G  V + YGMTETS  I  L     L+  G  G P   C++++    V VP         P   GEI V+GP +  GY+  E  T+E I ++GW HTGD+G     G L ++DR+ ++  ++ GE I   +IE V      V +  V G   D +     A V            S  I  E + HFC +  A+  V      P+K    E L
Sbjct:  256 RCMLLGGGPAPKP-----LLETCVDKGIPVYQTYGMTETSSQICTLSADYMLTKVGSAGKPLFQCQLRIEKDGVVVP---------PFAEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLI-ISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV----------VKSGEITEEEILHFCEEKLAKYKV------PKKACFLEEL 462          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: MENE_BACAN (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis GN=menE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.173e-13
Identity = 73/239 (30.54%), Postives = 103/239 (43.10%), Query Frame = 2
Query:  263 RVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKL----VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMDSPRKKTSFERL 946
            R   +G G +P        L+ C   G  V + YGMTETS  I  L     L+  G  G P   C++++    V VP         P   GEI V+GP +  GY+  E  T+E I ++GW HTGD+G     G L ++DR+ ++  ++ GE I   +IE V      V +  V G   D +     A V            S  I  E + HFC +  A+  V      P+K    E L
Sbjct:  255 RCMLLGGGPAPKP-----LLETCVDKGIPVYQTYGMTETSSQICTLSADYMLTKVGSAGKPLFQCQLRIEKDGVVVP---------PFAEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLI-ISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV----------VKSGEITEEEILHFCEEKLAKYKV------PKKACFLEEL 461          
The following BLAST results are available for this feature:
BLAST of DY305457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
LCFA_ECOLI1.385e-1433.92Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL61.385e-1433.92Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
4CL_PINTA1.809e-1430.664-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL3_ARATH3.086e-1434.184-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL2_ORYSJ4.031e-1430.77Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CLL1_ARATH5.265e-1431.284-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
LUCI_PHOPE8.980e-1430.49Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]
ACBG1_RAT8.980e-1427.17Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus... [more]
MENE_BACC01.173e-1330.542-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACAN1.173e-1330.542-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305457 ID=DY305457; Name=DY305457; organism=Citrus sinensis; type=EST; length=1270bp
GGTTGGATTTTACCAGGGGGATAATATGAAACTGATGGATGATCTGGCAG
CTCTAAGACCTACTGTATTCTGCAGTGTTCCTCGGCTGTACAATAGAATA
TATGCTGGCATCACAAGTGCCGTAAGAACATCTGGTGGACTAAGGGAGAG
ACTGTTCAATGCTGCCTACAATGCTAAGAAGCAAGCGATGTTGAGCGGTA
AGAATCCGTCTCCCATGTGGGACAGATTGGTATTCAACAAGATAAAGGAC
AAACTTGGAGGACGAGTACGTTTTATGGGTTCTGGTGCTTCTCCCTTGTC
TCCTGATGTCTTGGATTTCTTAAAAATCTGCTTTGGTGGGCGTGTAACTG
AAGGATATGGAATGACTGAGACTTCATGTCTTATAAGTCAGCTGGATGAG
GGTGACAACCTTTCTGGTCATGTTGGCTCTCCAAATGCAGCATGTGAGAT
AAAGCTTGTGGATGTCCCAGAAATGAACTACACATCTGAGGATCAACCAT
GTCCTCGCGGAGAAATCTGTGTTAGAGGTCCCCTAATTTTCAAGGGCTAT
TATAAAGATGAAATCCAGACAAAAGAAGTTATTGATGAAGATGGATGGTT
TCATACTGGAGATATAGGAATGTGGATACCCGGTGGTCGTCTAAAGATTA
TTGATAGGAAGAAGAATATTTTTAAGTTAGCGCAGGGAGAGTACATAGCT
GCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAGTTTGTTGGTCAGTG
CTTTGTCTATGGTGACAGCTTCAATTCGGCTTTGGTAGCCATTGTCTCAT
TGGACCAAGATGCTTTTAAAGCCTGGGCTGCATCTGAAAGCATTCAATAT
GAAAACTTAGAGCACTTTTGCAATGACCCAAGGGCGAGGGCTGCTGTGTT
GGCTGATATGGATTCTCCTAGAAAAAAAACCTCATTTGAAAGGCTTTGAT
TTTTTAAAACGGTGACTTTGGTGCCTCAACCCTTCCCAGTGGAAAAGGGA
CTGCTCCCTCCCACATTTAAAAAAAAAAAACCACAACCAAAACAATCTTT
TTCAAAAACCCATTTCGAAATATTATGGTTAACTTTTTTAAATTTTTATT
CCCTCCCCAAAACATTTGTGGAAAAACATCCAAAATCCCCAAAGGGTGTA
AAAATTAAAAAGGGTTTTTTTAAAAAATTTTTTTTTTTTACAAAATATTC
CCCCCCCAAAAAAAAAACAAAAACCGCGGGGGGGTGGGGGGGGCACTTCT
TTTCTTTTTTTTTTTTGTTT
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