DY305457

Overview
NameDY305457
Unique NameDY305457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1270
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.436e-12
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  344 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 715
            +T  YG TE S +I+Q    D+    V +   A     V + E     E Q   +GE+C RG  + KGYYKD+  T++ I+ DGW  TGD+ +    G  +I  R K++  +  GE I   +IE
Sbjct:  334 ITIAYGQTEASPVITQTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDML-IRGGENIYPREIE 456          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.098e-11
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  266 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 727
            +R    G  P+   V +  +   G  + EGYG+TE S L++    +  + SG +G P  + +++L D  + N     +P   GE+ VRGP +  GY++    T +V+ +DGW  TGDI      G L+I+DRKK++  L  G  +   +IE V A
Sbjct:  327 LRLSVGGGMPVQKAVAEKWETLTGKHLLEGYGLTECSPLVTGNPYDLKHYSGSIGLPVPSTDVRLRD-DDGNDVELGKP---GELWVRGPQVMLGYWQRPDATDDVL-KDGWLATGDIATMDEDGFLRIVDRKKDMI-LVSGFNVYPNEIEEVVA 475          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.098e-11
Identity = 56/178 (31.46%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  161 AAYNAKKQAMLSGKNPSP-MWDRLVFNKIKDKLGGR-VRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 676
            A + A ++  ++G   SP +   LV +++  K   R +R +G G +PL  D+ +  K  F    + +GYG+TE+S   +     + +   G VG  +   E K+VD      T E  P  + GE+ +RGP+I KGY  +E  + E +D++GW  TGD+  +     L I+DR K + K
Sbjct:  286 AMFKAVEKYKVTGMPVSPPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAASTFGPEEMVKYGSVGRISENMEAKIVDPS----TGESLPPGKTGELWLRGPVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIK 459          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.434e-11
Identity = 60/201 (29.85%), Postives = 93/201 (46.27%), Query Frame = 2
Query:  281 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSFNSALV-AIVSL------DQDAFKAWAASESIQYE 853
            SG++ L  +V    +   GG++ EGYG++E S +  +    G N  G +G P  + +  +         +   P   GEI V+GP + KGY+    +T  V+  DGW  TGD+G     G   I DRKK+I  +A G  I   ++E    + + + +  V G  DS+    V A V L      D +   A+A S    Y+
Sbjct:  330 SGSAALPVEVKQKFEKVTGGKLVEGYGLSEASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAA---PYEHGEIIVKGPQVMKGYWNKPEETAAVL-RDGWLFTGDMGYMDEEGFFYIADRKKDII-IAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYK 525          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: ACSF3_XENLA (Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.434e-11
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 2
Query:  263 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM----NYTSEDQPCP------------RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 634
            R+R M SG+S L   VL+  +   G  + E YGMTE    ++    G  + G VG+P    E++ V         +YT+  Q                GE+ VRGP +FK Y+   + T+E    DGWF TGD  M+  G
Sbjct:  327 RIRLMVSGSSALPVPVLERWQEITGHTLLERYGMTEIGMALTNPLHGPRVPGAVGAPLPGVEVRTVTQNPRKEGTSYTTHAQGDSTGTMVSVGLENREGELQVRGPAVFKEYWNKRLDTQEAFTSDGWFKTGDTAMYKDG 466          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.445e-11
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  275 MGSGASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 721
            + SGA+PLS   + DFL+      + +GYGMTE++ + ++    + LS +  VG      + K+VD    ++     P  RGE+ ++GP + KGY  +   T+  I ED W  TGDI  +   G L I+DR K I K  +G  IA   +E V
Sbjct:  330 VSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLSRYSSVGLLAPNMQAKVVDWSSGSFLP---PGNRGELWIQGPGVMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKY-KGFQIAPADLEAV 477          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: MENE_BACWK (2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.194e-11
Identity = 71/239 (29.71%), Postives = 101/239 (42.26%), Query Frame = 2
Query:  263 RVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKL----VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMDSPRKKTSFERL 946
            R   +G G +P        L+ C   G  V + YGMTETS  I  L     L+  G  G P   C++++    V VP         P   GEI V+GP +  GY+  E  T E I  +GW HTGD+G     G L ++DR+ ++  ++ GE I   +IE V      V +  V G   +S+     A V            S  +  E +  FC +  A+  V      P+K    E L
Sbjct:  255 RCMLLGGGPAPKP-----LLETCVEKGIPVYQTYGMTETSSQICTLTADYMLTKVGSAGKPLFQCQLRIEKDGVVVP---------PRAEGEIVVKGPNVTGGYFNREDATHEAI-RNGWLHTGDLGYLDEEGFLYVLDRRSDLI-ISGGENIYPAQIEEVLLSHPAVVEAGVVGMADESWGQVPAAFV----------VKSGDVTEEEIIRFCEEKLAKYKV------PKKACFLEEL 461          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.194e-11
Identity = 61/204 (29.90%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAVLADMD 913
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G     IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  VL+ ++
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGQAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFCFCEQNMAKFKVLSYLE 498          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.194e-11
Identity = 44/143 (30.77%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  260 GRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 676
            G++R + SG +PL  ++++  +  +    + +GYG+TE++ + +  D  +     G  G  +   E K+VD P+   + E  P  R GE+ +RGP + KGY+K+   T+  +  DGW  TGD+      G L ++DR K + K
Sbjct:  315 GQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGASTDSAEESRRYGTAGLLSPNTEAKIVD-PD---SGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIK 453          
BLAST of DY305457 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.448e-11
Identity = 61/199 (30.65%), Postives = 90/199 (45.23%), Query Frame = 2
Query:  332 FGGRVTEGYGMTETSCLISQLDEGDNLSG-HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPL---IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSF-NSALVAIVSLDQDAFKAWAASESIQYENLEHFCNDPRARAAV 898
            FG R+   YGMTET   I     GD      +G      E ++ D         ++P P GEI   C++G L   IFK Y+ +   T +V++ DGW HTGD G     G    +DR+ N+ K   GE ++  ++EN+ A    +    V G  DS  + A+ A V L++         E++  E    FC    A+  V
Sbjct:  311 FGVRLLTSYGMTETIVGIIGDRLGDKRRWPSIGRAGFCYEAEIRD-------DHNRPLPAGEIGEICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRG-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--------GETLSEEEFFRFCEQNMAKFKV 493          
The following BLAST results are available for this feature:
BLAST of DY305457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
YNGI_BACSU6.436e-1234.68Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
LCFA_YERPE1.098e-1132.90Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
4CLL9_ARATH1.098e-1131.464-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
LCFA_BACSU1.434e-1129.85Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
ACSF3_XENLA1.434e-1132.86Acyl-CoA synthetase family member 3, mitochondrial... [more]
4CLL6_ARATH2.445e-1134.874-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
MENE_BACWK3.194e-1129.712-succinylbenzoate--CoA ligase OS=Bacillus weihens... [more]
CAIC_ECO273.194e-1129.90Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
4CLL4_ORYSJ3.194e-1130.774-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
CAIC_SHIDS5.448e-1130.65Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305457 ID=DY305457; Name=DY305457; organism=Citrus sinensis; type=EST; length=1270bp
GGTTGGATTTTACCAGGGGGATAATATGAAACTGATGGATGATCTGGCAG
CTCTAAGACCTACTGTATTCTGCAGTGTTCCTCGGCTGTACAATAGAATA
TATGCTGGCATCACAAGTGCCGTAAGAACATCTGGTGGACTAAGGGAGAG
ACTGTTCAATGCTGCCTACAATGCTAAGAAGCAAGCGATGTTGAGCGGTA
AGAATCCGTCTCCCATGTGGGACAGATTGGTATTCAACAAGATAAAGGAC
AAACTTGGAGGACGAGTACGTTTTATGGGTTCTGGTGCTTCTCCCTTGTC
TCCTGATGTCTTGGATTTCTTAAAAATCTGCTTTGGTGGGCGTGTAACTG
AAGGATATGGAATGACTGAGACTTCATGTCTTATAAGTCAGCTGGATGAG
GGTGACAACCTTTCTGGTCATGTTGGCTCTCCAAATGCAGCATGTGAGAT
AAAGCTTGTGGATGTCCCAGAAATGAACTACACATCTGAGGATCAACCAT
GTCCTCGCGGAGAAATCTGTGTTAGAGGTCCCCTAATTTTCAAGGGCTAT
TATAAAGATGAAATCCAGACAAAAGAAGTTATTGATGAAGATGGATGGTT
TCATACTGGAGATATAGGAATGTGGATACCCGGTGGTCGTCTAAAGATTA
TTGATAGGAAGAAGAATATTTTTAAGTTAGCGCAGGGAGAGTACATAGCT
GCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAGTTTGTTGGTCAGTG
CTTTGTCTATGGTGACAGCTTCAATTCGGCTTTGGTAGCCATTGTCTCAT
TGGACCAAGATGCTTTTAAAGCCTGGGCTGCATCTGAAAGCATTCAATAT
GAAAACTTAGAGCACTTTTGCAATGACCCAAGGGCGAGGGCTGCTGTGTT
GGCTGATATGGATTCTCCTAGAAAAAAAACCTCATTTGAAAGGCTTTGAT
TTTTTAAAACGGTGACTTTGGTGCCTCAACCCTTCCCAGTGGAAAAGGGA
CTGCTCCCTCCCACATTTAAAAAAAAAAAACCACAACCAAAACAATCTTT
TTCAAAAACCCATTTCGAAATATTATGGTTAACTTTTTTAAATTTTTATT
CCCTCCCCAAAACATTTGTGGAAAAACATCCAAAATCCCCAAAGGGTGTA
AAAATTAAAAAGGGTTTTTTTAAAAAATTTTTTTTTTTTACAAAATATTC
CCCCCCCAAAAAAAAAACAAAAACCGCGGGGGGGTGGGGGGGGCACTTCT
TTTCTTTTTTTTTTTTGTTT
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