DY305454

Overview
NameDY305454
Unique NameDY305454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1158
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305454 vs. ExPASy Swiss-Prot
Match: GPMI_MYCS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma synoviae (strain 53) GN=gpmI PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.821e-18
Identity = 80/309 (25.89%), Postives = 141/309 (45.63%), Query Frame = 3
Query:    3 VLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPICIGGPGLQMMSSSPKLT*GWAGNVTTTLI 926
            +LG++ ++F+SA+E +  L+   N  D++L P      + +    + D DAV+ FNFR DR   L+  +       +      K+  +  M++Y+G   +  +       ++   G+            +ET K+ HVT+F +G     + ++  + + + S    ++   P+M A EI  +      ++ F    +N  N DMVGHTG +E+T+VA +  D+ +  ++   EK      +TADHGNAE M+           D N + +T HT  PV +      L       KL  G   N+  T++
Sbjct:  202 ILGKSGNEFSSALEYLD-LQYSQNITDEFLEPAKNSTLDSRYF--LKDNDAVIFFNFRPDRARQLSHLILNSSLYDYQPSHLVKVSDFVSMMKYEG---IKCNIAYEEMLVNNPIGKVFEDANKTQLRVAETQKYAHVTYFMDGGVDVEYKNS--KRIMVDSLKVESYADTPQMSAEEITSQVISH--AKDFDLTILNYANPDMVGHTGVLESTLVALEVLDKQLSRLVKWAEKNKITVFITADHGNAEVML-----------DENNKPVTKHTSSPVMLVTSDKSL-------KLKPGKLANIAPTVL 482          
BLAST of DY305454 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.378e-18
Identity = 84/316 (26.58%), Postives = 145/316 (45.89%), Query Frame = 3
Query:    3 VLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE--IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPICIGGPGLQMMSSSPKLT*GWAGNVTTTLI 926
            +LG+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D +++  +       +  M++Y+G      + LV+  E  ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +++ S       G   N+  T++
Sbjct:  204 LLGKAENTFTDPIDYIN-FQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG-----INCLVAFEEMRVENPLGKLISMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVMLISSDKTIKLKS-------GKLANIAPTIL 484          
BLAST of DY305454 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 7448) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.378e-18
Identity = 84/316 (26.58%), Postives = 145/316 (45.89%), Query Frame = 3
Query:    3 VLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE--IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPICIGGPGLQMMSSSPKLT*GWAGNVTTTLI 926
            +LG+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D +++  +       +  M++Y+G      + LV+  E  ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +++ S       G   N+  T++
Sbjct:  204 LLGKAENTFTDPIDYIN-FQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG-----INCLVAFEEMRVENPLGKLISMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVMLISSDKTIKLKS-------GKLANIAPTIL 484          
BLAST of DY305454 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.226e-16
Identity = 65/235 (27.66%), Postives = 110/235 (46.81%), Query Frame = 3
Query:  138 IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIID--AIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPV 833
            + +GD+++ FNFR DR   L+      +   +      +I  +  +++Y+G   + S       E+    G+ L  N ++    +ET K+ HVTFF++G     + +  E  + + S    +F   P M A EI +     I    F  + +N  N DMVGHTG++ AT+ A +  D   + I++  ++      + +TADHGNAE           + +D N +  T HT  PV
Sbjct:  241 VKNGDSIIFFNFRPDRARQLSHMFIGSNLYTYKPKNQVQIDNFVSLMKYEG---INSKIAFKEMEVVNPLGKVLESNDIKQLRLAETQKYAHVTFFFDGGVDIEYKN--ENRILVDSLKVDSFADYPHMSAKEITDSLLNNIEKNDF--IIMNYANPDMVGHTGNLNATIEAIEFLDSQFQRILEYVSLNHENVTWFITADHGNAE-----------ITEDENNKPATKHTTSPV 457          
The following BLAST results are available for this feature:
BLAST of DY305454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_MYCS51.821e-1825.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHJ2.378e-1826.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH72.378e-1826.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHP2.226e-1627.662,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AB10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305454 ID=DY305454; Name=DY305454; organism=Citrus sinensis; type=EST; length=1158bp
GAGTTCTTGGAGAAGCTCCACACAAGTTTAACAGCGCCGTTGAAGCTGTC
AAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATT
TGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTG
ATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCT
AAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCC
TAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTC
CCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAA
TATTTAGTGCATAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAA
GTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCG
ACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACT
TTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAA
GAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAA
ATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCA
TGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAA
AGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACA
TGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAAGATGGCAATATT
CAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTTGCATCGGAGG
TCCTGGACTGCAGATGATGTCAAGTTCCCCAAAATTAACCTAAGGGTGGG
CGGGCAATGTAACAACAACTTTAATCATCCCATGAAAAGAGGCGGCCAAT
GAATAAAAACCCATCTAATTAAATAACTGAAAAGGAAAAAAAATGAAGAA
TGGGCAAAAAATGAATCTCCCCCAATATATAAAATTCGGAAGAAATTCCT
TAAAAATAAAAAAAAAAAATTTAATTTTGGGGGCTTTGAATTTTTTTTTT
AAAACCGGGGGGGGTTTTTTACCCCTAATTTTTTTAATGGGGGGTTGTGG
TGGAAGGA
back to top