DY305445

Overview
NameDY305445
Unique NameDY305445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1260
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: ADH_SULSO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus solfataricus GN=adh PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.862e-12
Identity = 63/211 (29.86%), Postives = 93/211 (44.08%), Query Frame = 3
Query:  162 VTFKVTHCGICHSDLHMIKNEWGN--------TIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS-EAIERLGADSFLVSRDQDEM 767
            V  KV   G+CHSD+HM +  +GN           P+  GHEI G + EVG +V  +  GD V V    G   +C  C I  E+ C        N   DG   Y  Y  ++V    ++ ++     ++A APL C+GIT Y  +R   LD                   + AKA+    T+I     +++ EA +R GAD  + +  QD +
Sbjct:   28 VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGE-GNCYYCRIGEEHLCDSPRWLGIN--FDG--AYAEY--VIVPHYKYMYKLRRLNAVEA-APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAGADYVINASMQDPL 229          
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.351e-12
Identity = 43/148 (29.05%), Postives = 69/148 (46.62%), Query Frame = 3
Query:  156 KDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGT-------------ITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVY 560
            K+V  K+   G+C +D+  +  +  +   P++ GHE VG+V  VG  VS  + GDKV + C +  C  C +C     N C ++ ++  +   +GT             I  G +S+  V  E  V +I EG PL+    + C   T Y
Sbjct:   35 KEVRIKMVATGVCGTDIKHLDTQELSKFCPMIMGHEGVGIVESVGEGVSSVRTGDKVILLC-IPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGY 181          
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: TDH_MARMS (L-threonine 3-dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.415e-11
Identity = 56/198 (28.28%), Postives = 90/198 (45.45%), Query Frame = 3
Query:  150 GEKDVTFKVTHCGICHSDLHMIK-NEWG-NTI-YPIVPGHEIVGVVTEVGSKVSKFKVGDKV-GVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGA 731
            G  DV  K++   IC +D+H+ + ++W  NTI  P+  GHE VGV+TEVG +VS FK+GD+V G G +  +C  C +C     + C K +    N+        G +++ +V       +IP     D  A     G   ++ L F   D  G                  AK +G +  VI+     + +  +++GA
Sbjct:   24 GHNDVVIKISKTAICGTDMHIYQWDDWAQNTIPVPMTVGHEFVGVITEVGPEVSGFKIGDRVSGEGHI--TCGHCRNCRAGRRHLCRKTLGVGVNR-------TGAFAEYLVIPASNAFKIPNNISDDMAAIFDPFGNATHTALSF---DLIGEDVLITGAGPIGAMAAAIAKHVGARNVVITDVNDFRLDLAKKMGA 209          
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: ADH_SULSR (NAD-dependent alcohol dehydrogenase OS=Sulfolobus sp. (strain RC3) GN=adh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.376e-11
Identity = 59/214 (27.57%), Postives = 96/214 (44.86%), Query Frame = 3
Query:  162 VTFKVTHCGICHSDLHMIKNEWGN--------TIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYC--PKVIMTYANKYHDGTITYGGYSDIMVADEH-FVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKS-EAIERLGADSFLVSRDQDEM 767
            V  KV   G+CHSD+HM +  +GN           P+  GHEI G + E+G +V  +  GD V V    G   +C  C I  E+ C  P+ +         G    G Y++ ++   + ++ ++     ++A +PL C+GIT Y  +R   LD                   + AKA+G   T+I     +++ E  +R GAD  + +  QD +
Sbjct:   28 VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEMGDEVVGYSKGDLVAVNPWQGE-GNCYYCRIGEEHLCDSPRWL---------GINFDGAYAEYVLNPHYKYMYKLRRLNAVEA-SPLTCSGITTYRAVRKASLDPTKTLVVVGAGGGLGTMAVQIAKAVG-GATIIGVDVREEAVETAKRAGADYVINASVQDPL 229          
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.021e-11
Identity = 59/235 (25.11%), Postives = 91/235 (38.72%), Query Frame = 3
Query:  159 DVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKV-------IMTYANK----------YH-DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAIERLGADSFLVSRDQDE--MQAAMGTMDGIID 803
            +V  K+ +  +CH+D +    +    ++P + GHE  G+V  VG  V++ + GD V + C    C  C  C     N C KV       IM    K          YH  GT T+  Y+   V  +  V +I    PLD    L C   T    +      +PG                + AK  G    +     SKK E  ++ G + F+  +D D+   +  +   DG +D
Sbjct:   36 EVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHV-IPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYT---VVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD 266          
BLAST of DY305445 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.170e-11
Identity = 45/160 (28.12%), Postives = 70/160 (43.75%), Query Frame = 3
Query:  156 KDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITY-------------GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPG 596
            K+V  K+   GIC +D H+IK    +  +P++ GHE  G+V  +G  V+  K GDKV +   +  C  C++C     N C +  +T      DGT  +               +++  V DE  V +I +  P +    + C   T Y      G  KPG
Sbjct:   35 KEVRIKILATGICRTDDHVIKGTMVSK-FPVIVGHEATGIVESIGEGVTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPG 192          
The following BLAST results are available for this feature:
BLAST of DY305445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
ADH_SULSO4.862e-1229.86NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH6_RAT6.351e-1229.05Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
TDH_MARMS1.415e-1128.28L-threonine 3-dehydrogenase OS=Marinomonas sp. (st... [more]
ADH_SULSR5.376e-1127.57NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADHX_ARATH7.021e-1125.11Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADH7_HUMAN9.170e-1128.13Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305445 ID=DY305445; Name=DY305445; organism=Citrus sinensis; type=EST; length=1260bp
GAAACTAAGCCAACAAACACCGATATCATTAAATTCATTCTGAAATGGGG
CAAGCACCGGAGCAAGAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAA
GGACACTTCTGGCGTTCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGG
GAGAGAAGGATGTGACATTCAAAGTAACTCACTGTGGGATATGCCATTCA
GATCTTCACATGATAAAAAATGAATGGGGCAATACCATTTACCCAATCGT
CCCCGGACATGAGATTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGA
GTAAATTCAAAGTCGGAGACAAAGTGGGAGTAGGATGCATGGTGGGATCA
TGCCACTCTTGTGATAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAA
AGTTATAATGACCTATGCCAACAAGTACCATGATGGAACCATCACATACG
GAGGCTACTCTGACATTATGGTTGCCGATGAGCACTTTGTGGTCCGTATT
CCTGAAGGCACACCACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTAT
CACAGTCTACAGTCCGTTGAGATTCTATGGACTCGACAAGCCTGGTATGC
ATGTGGGTGTTGTCGGCTTGGGCGGTCTAGGCCATGTCGCCGTCAAATTC
GCAAAGGCTATGGGGGTCAAGGTGACTGTGATCAGTACCTCCCCTAGCAA
GAAGAGTGAAGCCATTGAACGTCTTGGCGCTGATTCCTTTTTGGTCAGTC
GTGATCAAGATGAGATGCAGGCTGCCATGGGCACAATGGATGGTATTATC
GATACAGTATCTGCAGTTCACCCTCTAATGCCGTTGATTGGACTGTTGAA
ATCCCAAGGAAGCTTGGACTTGTTGGTGGACCAAAAGAACCCCGGAACTA
CCACCTTCTCCCTGCTCAGGGGAAGAAAAAATTTGGGGGCACCATAATTG
GGGGGAAAAAGGAAATCAAAAAAATAATGATTTTGCCGGCAAACAAAACA
TCCAAAACTGAATTGAGGGTCAAACCGGCCCAATATGGAAAACCACCCCT
GGAACCCCCTTCTAAAACCCAAGTTAAAAATTCCCTTTTTTTCATCACCC
TTTGCAAAACAACAAGAAAACCCCCCCCCCTTAAAAATTTTTTTTTCCTT
TTTTGTTTTTGCCCCTATAAAAAAGAAAAGGAAAGGGGGGGTGTTTTATT
TTTTGTCCAGGGACCCACACCCACCCTCCCCTCCAAATAATATATTTAAT
ATAATAAAAT
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