DY305444

Overview
NameDY305444
Unique NameDY305444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1249
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAP8 (Protein thf1 OS=Cyanothece sp. (strain PCC 8801) GN=thf1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.305e-25
Identity = 65/190 (34.21%), Postives = 108/190 (56.84%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEV-EGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++TK +F   + RPI SIY   ++EL+V+ HL+     ++YDP++ALG V  + + M+GY  +ED+ +IF A   A+  D E+YR +AQ L    +G + S L+     ++ GE  EG+L +  +  +    F YSR FA+GL+ ++   +A              +LC  LN++   + +DLD+YR+
Sbjct:    6 TVSDTKRDFYNHHTRPINSIYRRFIEELLVEMHLLCVNIDFRYDPIYALGVVASFQQFMQGYRPEEDKNSIFSALCQAVGGDGEKYRHEAQTLLNQVKGMSVSDLIAMGNSARTGEPGEGMLYNTLQAIAKNPQFKYSRLFAIGLYTMVMEIDADLLKEQDKRNETFSQLCNGLNLSSDKLQKDLDLYRS 195          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNP6 (Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thf1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.105e-24
Identity = 64/191 (33.51%), Postives = 105/191 (54.97%), Query Frame = 1
Query:   13 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN---ATEPTVLEKLCAVL----NVNKRSVDRDLDVYRN 555
            PTV+++K  F   Y RPI  +Y  V++EL+V+ HL+    ++ YDP+FALG VT +D  M  Y   E    +F A   A++++PEQYR DA  + E  RG  + ++ ++ ++    G    ++    +  +G+  F YSR FA+GLF LLE A      +P  L+     +    ++    + +DLD+YR+
Sbjct:    5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFMSSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRS 195          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNE7 (Protein thf1 OS=Synechococcus elongatus (strain PCC 7942) GN=thf1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.105e-24
Identity = 64/191 (33.51%), Postives = 105/191 (54.97%), Query Frame = 1
Query:   13 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN---ATEPTVLEKLCAVL----NVNKRSVDRDLDVYRN 555
            PTV+++K  F   Y RPI  +Y  V++EL+V+ HL+    ++ YDP+FALG VT +D  M  Y   E    +F A   A++++PEQYR DA  + E  RG  + ++ ++ ++    G    ++    +  +G+  F YSR FA+GLF LLE A      +P  L+     +    ++    + +DLD+YR+
Sbjct:    5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFMSSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRS 195          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNP2 (Protein thf1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=thf1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.214e-24
Identity = 66/189 (34.92%), Postives = 110/189 (58.20%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGI--LNDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++TK +F   + RPI SI+  V++EL+V+ HL+     ++YDP +ALG VT ++R M+GY  + D+ +IFQ+   A+  D  +Y+ DA  L E A+  + + L+E   ++   EG   L +  E  +   +F YSR FA+G++  L     +L   TE    +L  + A LN+ +  + +DLD+YR+
Sbjct:    6 TVSDTKRDFYTHHTRPINSIFRRVVEELLVEMHLLSVNADFRYDPFYALGVVTSFERFMQGYRPEADKVSIFQSMCQAIGGDANRYKEDAMALVELAKRCSGTQLIECFRQDVPPEGAQELWEKIEAIAKNDHFKYSRLFAIGVYTFLGESEPQLLEDTEKRDEMLTTVTAGLNLPEEKMKKDLDLYRS 194          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAA5 (Protein thf1 OS=Cyanothece sp. (strain ATCC 51142) GN=thf1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.553e-23
Identity = 65/189 (34.39%), Postives = 104/189 (55.03%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++TK  F   + RPI SIY   ++EL+V+ HL+     ++YDP++ALG VT ++R M+GY  + D+ +IF A   A+  + EQY  +A+ L   A+G    S+ EF  K G+   +GIL       +    F YSR F VGL+ LL     +L    +     ++++   L  +   + +DLD+YR+
Sbjct:    6 TVSDTKRKFYGYHTRPINSIYRRFVEELLVEMHLLSVNVDFKYDPIYALGVVTSFERFMQGYSPESDKTSIFNALCQAVDGNSEQYHQEAEALINEAKG---LSITEFKEKLGQEGGDGILWGTCGAIAQNPKFKYSRLFGVGLYTLLMEIDPDLVKEEDKRNQTIKEVSDALQFSSDKLQKDLDLYRS 191          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_GLOVI (Protein thf1 OS=Gloeobacter violaceus GN=thf1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.916e-23
Identity = 69/191 (36.13%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV-EGILNDIAERASGKGN---FSYSRFFAVGLFRLLELAN----ATEPTVLEKL---CAVLNVNKRSVDRDLDVYRN 555
            TV+++K  F   Y RP+ SIY  V+ EL+V+ HL+   + +++DP+FA G +T Y  LMEGY   E R+AI +A  TAL+   EQ   DA +    A    A  ++E  + + E  +G L  + +  +G  N   F YSR F++GL  +LE A      +E   LE+L   C  L ++   V RDLD + +
Sbjct:    6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRLKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHS 196          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_THEEB (Protein thf1 OS=Thermosynechococcus elongatus (strain BP-1) GN=thf1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.303e-22
Identity = 68/187 (36.36%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   10 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTV-----LEKLCAVLNVNKRSVDRDLDVYRN 555
            P TV++TK  F   + RPI SIY   ++EL+V+ HL+R    ++Y P+FALG VT +D+ MEGY  + DR+ IF A   A + +P+Q + DA   +++ +G+  S +++     G+    LN +    +GK    YSR  AVGL+  L+   A E T+     L++L  V+ +    V RDL++YR+
Sbjct:    4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQFMEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQY-QGRPLSQILD-ELNSGQPSAPLNSL--NHTGK----YSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRS 181          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNJB (Protein thf1 OS=Synechococcus sp. GN=thf1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.950e-21
Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE--GILNDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EP-----TVLEKLCAVLNVNKRSVDRDLDVYRN 555
            T++ TK  F   Y RPI ++Y  V++EL+V+ HL     T+ YDP FALG VT+YD LME Y   E REAIF A   AL   PE  R +A+ L E          ++    + E E  G L  I ER + +  ++YSR  AVGL+   E+   +   EP       LE + + L  +   V +DL++YR+
Sbjct:    6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLMEAYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMGSGDPRQRLDLLCLKPEAEDVGGLKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRS 194          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNY3 (Protein thf1 OS=Synechocystis sp. (strain PCC 6803) GN=thf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.677e-21
Identity = 63/188 (33.51%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++ K  F   Y RPI SIY   ++EL+V+ HL+     + YDP+FALG VT ++  M+GY   E   AIF A    + ++P+Q R DA+ +   A      + V    S++   + +L +       +  F YSR FA+GL+ LL     E+ +  E     L +L  +L+++   V +DLD+YR+
Sbjct:    6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQGYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLLLNTLTGIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDLYRS 193          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNJA (Protein thf1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=thf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.677e-20
Identity = 73/192 (38.02%), Postives = 98/192 (51.04%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARG----QTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EPT-----VLEKLCAVLNVNKRSVDRDLDVYRN 555
            T++ TK  F   Y RPI + Y  V++EL+V+ HL      + YDP FALG VT+YD LME Y   E REAIF A   AL   PE  R +A+ L E  R     Q  + L   P  E E  G L  I +R + +  ++YSR  AVGL+   E    +   EP       LE +   L  +   V +DL++YR+
Sbjct:    6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKP--EAEDVGGLKAILQRMT-QPPYAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRS 194          
The following BLAST results are available for this feature:
BLAST of DY305444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
THF1_CYAP81.305e-2534.21Protein thf1 OS=Cyanothece sp. (strain PCC 8801) G... [more]
THF1_SYNP61.105e-2433.51Protein thf1 OS=Synechococcus sp. (strain ATCC 271... [more]
THF1_SYNE71.105e-2433.51Protein thf1 OS=Synechococcus elongatus (strain PC... [more]
THF1_SYNP23.214e-2434.92Protein thf1 OS=Synechococcus sp. (strain ATCC 272... [more]
THF1_CYAA53.553e-2334.39Protein thf1 OS=Cyanothece sp. (strain ATCC 51142)... [more]
THF1_GLOVI7.916e-2336.13Protein thf1 OS=Gloeobacter violaceus GN=thf1 PE=3... [more]
THF1_THEEB2.303e-2236.36Protein thf1 OS=Thermosynechococcus elongatus (str... [more]
THF1_SYNJB1.950e-2137.37Protein thf1 OS=Synechococcus sp. GN=thf1 PE=3 SV=... [more]
THF1_SYNY39.677e-2133.51Protein thf1 OS=Synechocystis sp. (strain PCC 6803... [more]
THF1_SYNJA3.677e-2038.02Protein thf1 OS=Synechococcus sp. (strain JA-3-3Ab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305444 ID=DY305444; Name=DY305444; organism=Citrus sinensis; type=EST; length=1249bp
GCTGATGTGCCTCCTACTGTGGCCGAGACAAAGATGAATTTTCTGAAGTT
ATATAAGAGACCAATCCCCAGTATTTACAACACCGTTCTACAGGAATTGA
TTGTCCAACAACATTTGATGAGGTACAAAAGAACATACCAATATGACCCT
GTGTTTGCCCTTGGATTTGTCACTGTATATGATCGACTCATGGAAGGCTA
TCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCATACATTACGGCAC
TGAAGGAGGATCCAGAGCAATACAGAATTGATGCACAAAAGTTAGAGGAA
TGGGCTCGGGGTCAGACTGCCAGTTCATTAGTTGAGTTCCCATCTAAAGA
AGGAGAAGTTGAGGGGATATTGAACGACATTGCAGAAAGAGCCAGCGGCA
AGGGGAATTTCAGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTCGCCTT
CTTGAACTGGCAAATGCAACTGAACCCACAGTGTTAGAAAAGCTTTGTGC
AGTCTTAAATGTTAACAAAAGAAGTGTGGATCGTGACCTTGATGTATATC
GCAATTTATTATCCAAGCTGCTTCAAGCTAAAGAGTTGCTGAAGGAGTAT
GTGGATAGGGAAAAGAAGAAGAGAGAAGAAAGGACAGAACCGCACAAGGC
TAATGAAGCCATTAAAAAATGTCTGGGAGAATACCTATATTCCCATCAGT
AATTCCACCTGTGAACGAAACCGGCAATGCTAATCATCTCCTGTGAAGTT
TTCATCCCGTTTTTGTCTGCTTTGCGGTAGAGTTGGAACCCTCATGCCTC
ACGTACCATGTTTTAACCCTACAGGCTTGCCTGTTCCAATGACTTGTTTT
ATAACCGTGATTTGCAAACGTCCAGGCTTCACCAAGCTAATACCCAAATT
TCTTCTGGTTCAAAAAAAAAAAACAAAAAATAACTAGCGGGGGGGCCCGG
TTCCCACTTCCCCATACCATGTTCCTAAAACAATTCCACTGGCCCCGCTT
TTTTCACCTCCGTGACGGGGAAACCCAAGGGGATACCCCATTATATCCCC
GTTGGGCCCACCTCCACTTCCTCACAACGGGAAAGTATCCAGAAAGCGCC
CCCACCCTTTCCCCTTACCTAAACTCTCGAAACCCCAAAGGGGAAATTGG
GAGAATTACAGACCACTAAATTTTTTGGTTACAATTTTCCCGTTGTGTAT
ATTTTTTTTTTGTATTGACCGCCCCGCTCAATGTTTTTTTAACTCAAAA
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