DY305443
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSK (Elongation factor Tu OS=Mycobacterium sp. (strain KMS) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 68/255 (26.67%), Postives = 114/255 (44.71%), Query Frame = 2 Query: 11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 + E P V +S EGD +S L+DA+D +I +P R +D+P +P++DV+ I G GTV GRVE GV+ +V P T V VEM + L + GDNVG ++ + +D++RG V K F QV I++ G + P + + + +++ + G E+ + GD + + +P+ ++ RFA+R+ +TV G + + K Sbjct: 165 FDEDAPVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFDGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTDISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIHK 396
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSJ (Elongation factor Tu OS=Mycobacterium sp. (strain JLS) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 68/255 (26.67%), Postives = 114/255 (44.71%), Query Frame = 2 Query: 11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 + E P V +S EGD +S L+DA+D +I +P R +D+P +P++DV+ I G GTV GRVE GV+ +V P T V VEM + L + GDNVG ++ + +D++RG V K F QV I++ G + P + + + +++ + G E+ + GD + + +P+ ++ RFA+R+ +TV G + + K Sbjct: 165 FDEDAPVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFDGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTDISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIHK 396
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2 Query: 107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 L++A+D +I +P R +DKP +P++DV+ I G GTV GRVE GV+ +V PS T V VEM + L + GDNVG ++ V +D++RG V +K F QV I++ G + P + + + +++ + G E+ + GD + + +P+ ++ RFA+R+ +TV G + + K Sbjct: 193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2 Query: 107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 L++A+D +I +P R +DKP +P++DV+ I G GTV GRVE GV+ +V PS T V VEM + L + GDNVG ++ V +D++RG V +K F QV I++ G + P + + + +++ + G E+ + GD + + +P+ ++ RFA+R+ +TV G + + K Sbjct: 193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2 Query: 107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 L++A+D +I +P R +DKP +P++DV+ I G GTV GRVE GV+ +V PS T V VEM + L + GDNVG ++ V +D++RG V +K F QV I++ G + P + + + +++ + G E+ + GD + + +P+ ++ RFA+R+ +TV G + + K Sbjct: 193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_METCA (Elongation factor Tu OS=Methylococcus capsulatus GN=tuf1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 59/218 (27.06%), Postives = 108/218 (49.54%), Query Frame = 2 Query: 107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748 L+ ALD+ I EP+R D+P +P++DV+ I G GTV GRVE G++K G +V P+ TT VEM + L + GDN+G ++ +D++RG V +K +F +++ +++ + G + P + + + +++ + G E+ + GD +++ P+ ++ RFAVR+ +TV GV+ + Sbjct: 194 LVQALDDYIPEPERAIDRPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRPTAKTT-CTGVEMFRKLLDQGQAGDNIGVLLRGTKREDVERGQVL--AKPGSITPHTHFEAEIYVLSK--EEGGRHTPFFNGYRPQFYFRTTDVTGAVTLPEGVEM------VMPGDNVKIEVKLIAPIAMDEGL------RFAVREGGRTVGAGVVSKI 394
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 61/221 (27.60%), Postives = 106/221 (47.96%), Query Frame = 2 Query: 107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751 L+D +D+ I EPKR +DKP +P++DV+ I G GTV GRV+ GVL G + GL E+K +EM + L EA GDN+G ++ V +++RG V +K + F ++V +++ + G + P + +++ ++ +G E+ + GD ++ P+ +E +F VR+ TV G + +E Sbjct: 192 LMDTVDSYIPEPKRETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTGTEIEI--VGLKDEIKKTTVTGIEMFRKTLDEAQAGDNIGALLRGVDRNEIERGQVL--AKPGSIKTHKKFKAEVYVLSK--EEGGRHTPFFTNYRPQFYFHTTDVTGVVELPAGVEM------VMPGDQVTFEIELISPVAIEQGL------KFTVREGGHTVGAGTVTEIE 394
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 69/250 (27.60%), Postives = 117/250 (46.80%), Query Frame = 2 Query: 44 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754 GF GD++ + R ++L G L++A+DN I P+R D+P +P++DV+ I G GTV GRVE GV+K G +V P+ TT VEM + L + GDN+G ++ ++++RG V +K NF +V ++ G + P + + +++ + G E+ + GD + + P+ +E RFA+R+ +TVA GV+ + K Sbjct: 162 GFPGDDIPVIRGSSLGALNGEEKWVEKILELMEAVDNYIPTPERAVDQPFLMPIEDVFTITGRGTVVTGRVERGVIKVGEEIEIVGIKPTTKTT-CTGVEMFRKLLDQGQAGDNIGVLLRGTKKEEVERGQVL--AKPGSIHPHTNFKGEVYVLTK--DEGGRHTPFFTGYRPQFYFRTTDITGAVTLPDGVEM------VMPGDNITMTVELIHPIAMEQGL------RFAIREGGRTVASGVVSEITK 394
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 69/247 (27.94%), Postives = 114/247 (46.15%), Query Frame = 2 Query: 44 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748 GF GD++ I + + L+ G L+DA+D+ I EP R DKP +P++DV+ I G GTV GR+E G++K G V TT+ V +EM + L E GDN G ++ V + L+RG V +K F ++V I+ + G + P + + + +++ + G E+ + GD V + P+ +E RFA+R+ +TV G + + Sbjct: 161 GFPGDDIPIIKGSALNALNGDPEGEKAIMELMDAVDDYIPEPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGIIKVGNEVEIVGIKPTTKSVVTGIEMFQKTLDEGQAGDNAGLLLRGVDKEALERGMVI--AKPGSITPHTKFKAEVYILKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSVTLPEGVEM------VMPGDNLSVDVELIAPIAMEESL------RFAIREGGRTVGAGSVTKI 391
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURXL (Elongation factor Tu OS=Burkholderia xenovorans (strain LB400) GN=tuf1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14 Identity = 64/218 (29.36%), Postives = 105/218 (48.17%), Query Frame = 2 Query: 107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748 L DALD I P+R D +P++DV+ I G GTV GRVE GV+K G +V P+ TT VEM + L + GDNVG ++ +D++RG V +K +FT++V +++ G + P + + + +++ I EL K+ + + GD + + P+ +E RFA+R+ +TV GV+ + Sbjct: 194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSINPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394 The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bpback to top |