DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSK (Elongation factor Tu OS=Mycobacterium sp. (strain KMS) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 68/255 (26.67%), Postives = 114/255 (44.71%), Query Frame = 2
Query:   11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + E  P V +S     EGD    +S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE GV+       +V   P    T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  165 FDEDAPVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFDGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTDISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIHK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSJ (Elongation factor Tu OS=Mycobacterium sp. (strain JLS) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 68/255 (26.67%), Postives = 114/255 (44.71%), Query Frame = 2
Query:   11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + E  P V +S     EGD    +S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE GV+       +V   P    T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  165 FDEDAPVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFDGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTDISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIHK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2
Query:  107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2
Query:  107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 62/220 (28.18%), Postives = 105/220 (47.73%), Query Frame = 2
Query:  107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  193 LMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_METCA (Elongation factor Tu OS=Methylococcus capsulatus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 59/218 (27.06%), Postives = 108/218 (49.54%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+ ALD+ I EP+R  D+P  +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDN+G  ++    +D++RG V   +K        +F +++ +++   + G  + P  + +      + +++   +    G E+      +  GD   +++    P+ ++         RFAVR+  +TV  GV+  +
Sbjct:  194 LVQALDDYIPEPERAIDRPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRPTAKTT-CTGVEMFRKLLDQGQAGDNIGVLLRGTKREDVERGQVL--AKPGSITPHTHFEAEIYVLSK--EEGGRHTPFFNGYRPQFYFRTTDVTGAVTLPEGVEM------VMPGDNVKIEVKLIAPIAMDEGL------RFAVREGGRTVGAGVVSKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 61/221 (27.60%), Postives = 106/221 (47.96%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L+D +D+ I EPKR +DKP  +P++DV+ I G GTV  GRV+ GVL  G  +     GL  E+K      +EM  + L EA  GDN+G  ++ V   +++RG V   +K    +    F ++V +++   + G  + P    +        +++   ++  +G E+      +  GD    ++    P+ +E         +F VR+   TV  G +  +E
Sbjct:  192 LMDTVDSYIPEPKRETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTGTEIEI--VGLKDEIKKTTVTGIEMFRKTLDEAQAGDNIGALLRGVDRNEIERGQVL--AKPGSIKTHKKFKAEVYVLSK--EEGGRHTPFFTNYRPQFYFHTTDVTGVVELPAGVEM------VMPGDQVTFEIELISPVAIEQGL------KFTVREGGHTVGAGTVTEIE 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 69/250 (27.60%), Postives = 117/250 (46.80%), Query Frame = 2
Query:   44 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            GF GD++ + R ++L    G          L++A+DN I  P+R  D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT    VEM  + L +   GDN+G  ++    ++++RG V   +K        NF  +V ++      G  + P    +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TVA GV+  + K
Sbjct:  162 GFPGDDIPVIRGSSLGALNGEEKWVEKILELMEAVDNYIPTPERAVDQPFLMPIEDVFTITGRGTVVTGRVERGVIKVGEEIEIVGIKPTTKTT-CTGVEMFRKLLDQGQAGDNIGVLLRGTKKEEVERGQVL--AKPGSIHPHTNFKGEVYVLTK--DEGGRHTPFFTGYRPQFYFRTTDITGAVTLPDGVEM------VMPGDNITMTVELIHPIAMEQGL------RFAIREGGRTVASGVVSEITK 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 69/247 (27.94%), Postives = 114/247 (46.15%), Query Frame = 2
Query:   44 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            GF GD++ I + + L+   G          L+DA+D+ I EP R  DKP  +P++DV+ I G GTV  GR+E G++K G  V       TT+  V  +EM  + L E   GDN G  ++ V  + L+RG V   +K         F ++V I+    + G  + P  + +      + +++   +    G E+      +  GD   V +    P+ +E         RFA+R+  +TV  G +  +
Sbjct:  161 GFPGDDIPIIKGSALNALNGDPEGEKAIMELMDAVDDYIPEPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGIIKVGNEVEIVGIKPTTKSVVTGIEMFQKTLDEGQAGDNAGLLLRGVDKEALERGMVI--AKPGSITPHTKFKAEVYILKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSVTLPEGVEM------VMPGDNLSVDVELIAPIAMEESL------RFAIREGGRTVGAGSVTKI 391          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURXL (Elongation factor Tu OS=Burkholderia xenovorans (strain LB400) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 64/218 (29.36%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSINPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCSK6.085e-1426.67Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCSJ6.085e-1426.67Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCBT6.085e-1428.18Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP6.085e-1428.18Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO6.085e-1428.18Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_METCA6.085e-1427.06Elongation factor Tu OS=Methylococcus capsulatus G... [more]
EFTU_LEUCK6.085e-1427.60Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_FUSNN6.085e-1427.60Elongation factor Tu OS=Fusobacterium nucleatum su... [more]
EFTU_CHLP86.085e-1427.94Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_BURXL6.085e-1429.36Elongation factor Tu OS=Burkholderia xenovorans (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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