DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BLOPB (Elongation factor Tu OS=Blochmannia pennsylvanicus (strain BPEN) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALDN I EPKR  D+P  LP++DV+ I G GTV  GR+E GV++ G  + +      + T    VEM  + L E   G+NVG  ++     +++RG V   SK    +  ++F S+V I+N     G  + P    +      + +++   I+   G ++      +  GD   + +    P+ ++         RFA+R+  +T+  G++  +
Sbjct:  192 LSDALDNYIPEPKRVVDQPFLLPIEDVFSISGRGTVVTGRIERGVIRVGEEIEIVGIKDTIKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVL--SKPGYIKPHSHFESEVYILNK--DEGGRHTPFFKGYRPQFYFRTTDITGTIELPEGADM------VMPGDNIRMIVHLIAPIAMDDGL------RFAIREGGRTIGAGIVSKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACTSZ (Elongation factor Tu OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 64/219 (29.22%), Postives = 108/219 (49.32%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MVVTFGPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L +ALD+ I EP+R  D+P  LP++DV+ I G GTV  GRVE G+++ G  V   G    T T V  VEM  + L E   G+N+G  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+ SV K
Sbjct:  192 LANALDSYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTTKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVL--AKPGSITPHTDFVSEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNVKMTVSLIHPIAMDQGL------RFAIREGGRTVGAGVVASVIK 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 64/251 (25.50%), Postives = 116/251 (46.22%), Query Frame = 2
Query:   17 EKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  + +
Sbjct:  166 DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEM------VMPGDNVRIDIDLITPIAIEEGL------RFAIREGGRTVGAGVVTGIRE 400          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_YERE8 (Elongation factor Tu 1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 64/211 (30.33%), Postives = 101/211 (47.87%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     GL   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGLKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIQMIVNLIAPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.085e-14
Identity = 64/251 (25.50%), Postives = 116/251 (46.22%), Query Frame = 2
Query:   17 EKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  + +
Sbjct:  166 DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEM------VMPGDNVRIDIDLITPIAIEEGL------RFAIREGGRTVGAGVVTGIRE 400          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRSV (Elongation factor Tu OS=Streptococcus sanguinis (strain SK36) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L+D +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K    +     G+  E++      VEM  + L E L GDNVG  ++ +   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMDTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEI--VGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PORYE (Elongation factor Tu, chloroplastic OS=Porphyra yezoensis GN=tufA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 60/222 (27.03%), Postives = 108/222 (48.65%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +L++A+D  I  P+R  DK   + ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  + L+E L GDN+G  ++ V  KD++RG V   +K         F ++V I+    + G  + P    +     V+ +++   I++ +  +   + + +  GD   +       + +E         RFA+R+  +TV  GV+  + K
Sbjct:  201 SLMEAVDTYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVL--AKPGTITPHTQFEAEVYILTK--EEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADD-GTDAEMVMPGDRIKMTAELINAIAIEQGM------RFAIREGGRTVGAGVVSKILK 409          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_NOSP7 (Elongation factor Tu OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 63/221 (28.51%), Postives = 106/221 (47.96%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L+DA+D+ I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G  V     GL    TT V  +EM  ++L+E L GDN G  ++ +  +D++RG V   +K         F  +V ++    + G    P    +     V+ +++   I   +  E  KE + +  GD   + +     + +E         RFA+R+  +T+  GV+  + K
Sbjct:  202 LMDAVDSFIPTPERDVDKPFLMAVEDVFTITGRGTVATGRIERGKVKVGDTVEL--IGLKDTRTTAVTGIEMFKKSLEEGLAGDNAGVLLRGLKKEDIERGMVI--AKPGSITPHTQFEGEVYVLTE--KEGGRKTPFFAGYRPQFYVRTTDVTGTIKAYTSDE-GKEVEMVMPGDRIKMTVELINAIAIEQGM------RFAIREGGRTIGAGVVSKIIK 409          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LISW6 (Elongation factor Tu OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 62/228 (27.19%), Postives = 110/228 (48.25%), Query Frame = 2
Query:   86 DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            DW  K   L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G    V+          V  VEM  + L  A  GDN+G  ++ VA +D++RG V   +K        NF ++  ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E  +      +F++R+  +TV  GV+ ++ K
Sbjct:  184 DWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVL--AKPGSITPHTNFKAETYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEM------VMPGDNIELAVELIAPIAIEDGT------KFSIREGGRTVGAGVVSNISK 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LISMO (Elongation factor Tu OS=Listeria monocytogenes GN=tuf PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 62/228 (27.19%), Postives = 110/228 (48.25%), Query Frame = 2
Query:   86 DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            DW  K   L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G    V+          V  VEM  + L  A  GDN+G  ++ VA +D++RG V   +K        NF ++  ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E  +      +F++R+  +TV  GV+ ++ K
Sbjct:  184 DWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVL--AKPGSITPHTNFKAETYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEM------VMPGDNIELAVELIAPIAIEDGT------KFSIREGGRTVGAGVVSNISK 395          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BLOPB6.085e-1428.11Elongation factor Tu OS=Blochmannia pennsylvanicus... [more]
EFTU_ACTSZ6.085e-1429.22Elongation factor Tu OS=Actinobacillus succinogene... [more]
EFTU2_PELTS6.085e-1425.50Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU1_YERE86.085e-1430.33Elongation factor Tu 1 OS=Yersinia enterocolitica ... [more]
EFTU1_PELTS6.085e-1425.50Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
EFTU_STRSV7.947e-1427.15Elongation factor Tu OS=Streptococcus sanguinis (s... [more]
EFTU_PORYE7.947e-1427.03Elongation factor Tu, chloroplastic OS=Porphyra ye... [more]
EFTU_NOSP77.947e-1428.51Elongation factor Tu OS=Nostoc punctiforme (strain... [more]
EFTU_LISW67.947e-1427.19Elongation factor Tu OS=Listeria welshimeri serova... [more]
EFTU_LISMO7.947e-1427.19Elongation factor Tu OS=Listeria monocytogenes GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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