DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 61/210 (29.05%), Postives = 96/210 (45.71%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I  P+RP+DK   +P++DV+ I G GTV  GRVETG LK G    +V          V  VEM  + L  AL GDN+G  ++ V  +D++RG V   +K         F  QV ++    + G  + P  + +      + +++   I    G E+      +      M   + TK  + +         RFA+R+  +TV  GV+ S+
Sbjct:  202 IPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVGDEVEIVGMKDEITKVVVTGVEMFRKILDSALAGDNIGALLRGVQREDIERGQVL--AKPGSITPHNKFVGQVYVLKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSIQLPDGVEM-----VMPGDHIDMTVELITKVAMGDNL-------RFAIREGGRTVGSGVVTSI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 70/252 (27.78%), Postives = 111/252 (44.05%), Query Frame = 2
Query:   17 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDAL--DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +  P +P+S     EGD          W K    L A   DN+ EP+R  DKP  +P++DV+ I G GTV  GRVE GVL P     +V        T V ++EM  + L +A  G+NVG  ++    +D++RG V    K         F +QV I++     G  + P    +      + +++   I    G E+      +  GD   + +   +P+ +E         RFA+R+  +TV  G +  +
Sbjct:  168 DNAPVIPVSALKALEGDEK--------WVKSVQDLMAAVDDNVPEPERDVDKPFLMPVEDVFTITGRGTVVTGRVERGVLLPNDEIEIVGIKEKSSKTTVTAIEMFRKTLPDARAGENVGLLLRGTKREDVERGQVI--VKPGSITPHTKFEAQVYILSK--DEGGRHNPFYSNYRPQFYFRTTDVTGVITLPEGTEM------VMPGDNTDMSVELIQPIAMEDRL------RFAIREGGRTVGAGRVTKI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACHLI (Elongation factor Tu OS=Acholeplasma laidlawii (strain PG-8A) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 63/217 (29.03%), Postives = 109/217 (50.23%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MVVTFGPSGL-TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+DA+D  I+ P R +DKP  +P++DV+ I G GTV  GRV+ G++K G  V   G +   TT V  VEM  + L +A  GDN+G  ++ V  + ++RG V   SK    +  A FT+Q+ +++   + G  +      +      + +++   I    G E+      +  GD   V +    P+ +E  +      +F++R+  +TVA G +  +
Sbjct:  192 LMDAVDAYIDTPLRATDKPFMMPVEDVFTITGRGTVATGRVDRGIVKVGDQVEIVGITDTKTTTVTGVEMFRKLLDQAEAGDNIGALLRGVDREGVERGQVL--SKPGTVKPHAKFTAQIYVLSK--EEGGRHTAFFSNYRPQFYFRTTDITGIITLGEGTEM------VMPGDNAEVTVELIHPIALEEGT------KFSIREGGRTVASGSVVKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPS (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPN (Elongation factor Tu 2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_YERP3 (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOLL (Elongation factor Tu 2 OS=Photorhabdus luminescens subsp. laumondii GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 65/217 (29.95%), Postives = 104/217 (47.93%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD+ I EP+R  D+P  LP++DV+ I G GTV  GRVE G++K G  V   G    T T    VEM  + L E   G+NVG  ++     +++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  192 LAEALDSYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIQMKVTLIAPIAMDQGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPP (Elongation factor Tu 1 OS=Yersinia pestis (strain Pestoides F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPE (Elongation factor Tu-A OS=Yersinia pestis GN=tufA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPA (Elongation factor Tu 1 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + MI T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NINMIVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOAB7.947e-1429.05Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_BRELN7.947e-1427.78Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_ACHLI7.947e-1429.03Elongation factor Tu OS=Acholeplasma laidlawii (st... [more]
EFTU2_YERPS7.947e-1430.99Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_YERPN7.947e-1430.99Elongation factor Tu 2 OS=Yersinia pestis bv. Anti... [more]
EFTU2_YERP37.947e-1430.99Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_PHOLL7.947e-1429.95Elongation factor Tu 2 OS=Photorhabdus luminescens... [more]
EFTU1_YERPP7.947e-1430.99Elongation factor Tu 1 OS=Yersinia pestis (strain ... [more]
EFTU1_YERPE7.947e-1430.99Elongation factor Tu-A OS=Yersinia pestis GN=tufA ... [more]
EFTU1_YERPA7.947e-1430.99Elongation factor Tu 1 OS=Yersinia pestis bv. Anti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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