DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_PHOLL (Elongation factor Tu 1 OS=Photorhabdus luminescens subsp. laumondii GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.947e-14
Identity = 65/217 (29.95%), Postives = 104/217 (47.93%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD+ I EP+R  D+P  LP++DV+ I G GTV  GRVE G++K G  V   G    T T    VEM  + L E   G+NVG  ++     +++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  192 LAEALDSYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVL--AKPGSIKPHTTFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIQMKVTLIAPIAMDQGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 61/217 (28.11%), Postives = 108/217 (49.77%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+DA+DN I  P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  V       T  T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I   + K++        N     V++I  KP+ ++  S      +F++R+  +TV  GV+  +
Sbjct:  192 LMDAVDNYIPHPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEVEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDQFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTIKLPADKQMVMPG---DNATTFTVELI--KPIAMQQGS------KFSIREGGKTVGAGVVTKI 393          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RALEH (Elongation factor Tu OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 64/218 (29.36%), Postives = 104/218 (47.71%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD  I  P+R  D    +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 60/218 (27.52%), Postives = 103/218 (47.25%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L+ A+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L +   GDN+G  ++ V  +D++RG V    K    +    F ++  I+      G  + P    +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  G++ S+
Sbjct:  188 SLMAAVDDYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREDVERGQVL--CKPGSVKPHTKFKAEAYILTK--DEGGRHTPFFTNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNVAMDVTLIVPIAMEEKL------RFAIREGGRTVGAGIVSSI 389          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LACRJ (Elongation factor Tu OS=Lactobacillus reuteri (strain JCM 1112) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M    + G  + P    +        +++   I+   G E+      +  GD     +   KP+ +E         +F +R+   TV  GV+  +
Sbjct:  193 LMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM------VMPGDNVTFTVNLQKPVALEKGL------KFTIREGGHTVGAGVVSDI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_LACRD (Elongation factor Tu OS=Lactobacillus reuteri (strain DSM 20016) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M    + G  + P    +        +++   I+   G E+      +  GD     +   KP+ +E         +F +R+   TV  GV+  +
Sbjct:  193 LMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM------VMPGDNVTFTVNLQKPVALEKGL------KFTIREGGHTVGAGVVSDI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_HAEDU (Elongation factor Tu OS=Haemophilus ducreyi GN=tufA PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 65/235 (27.66%), Postives = 110/235 (46.81%), Query Frame = 2
Query:   56 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + +IE + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  + K
Sbjct:  187 EKIIELAQHLDSY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            LLDA+D  I  P+R +DK   +P++DV+ I G GTV  GRVE GV K G  V     GL     T +  VEMH + L + + GDNVG  ++ VA  D++RG V   +K         F + V +++     G  ++     +      + +++   ++  +G E+      +  GD     +   KP+ +E         RFA+R+  +TV  GV+  V
Sbjct:  203 LLDAIDAYIPTPERATDKTFLMPVEDVFTITGRGTVATGRVERGVCKVGDEVEI--VGLRDTKKTTITGVEMHRKLLDQGMAGDNVGVLLRGVARDDVERGQVL--AKPGSITPHTKFEASVYVLSK--DEGGRHSAFFGGYRPQFYFRTTDVTGVVELPAGVEM------VMPGDNVSFTVELIKPIAMEEGL------RFAIREGGRTVGAGVVTKV 403          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURS3 (Elongation factor Tu OS=Burkholderia sp. (strain 383) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  193 SLADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURCM (Elongation factor Tu OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  193 SLADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_PHOLL7.947e-1429.95Elongation factor Tu 1 OS=Photorhabdus luminescens... [more]
EFTU_RICAH1.038e-1328.11Elongation factor Tu OS=Rickettsia akari (strain H... [more]
EFTU_RALEH1.038e-1329.36Elongation factor Tu OS=Ralstonia eutropha (strain... [more]
EFTU_OCHA41.038e-1327.52Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_LACRJ1.038e-1327.06Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_LACRD1.038e-1327.06Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_HAEDU1.038e-1327.66Elongation factor Tu OS=Haemophilus ducreyi GN=tuf... [more]
EFTU_DEIGD1.038e-1330.14Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU_BURS31.038e-1328.77Elongation factor Tu OS=Burkholderia sp. (strain 3... [more]
EFTU_BURCM1.038e-1328.77Elongation factor Tu OS=Burkholderia ambifaria (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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