DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURCH (Elongation factor Tu OS=Burkholderia cenocepacia (strain HI2424) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  193 SLADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURCE (Elongation factor Tu OS=Burkholderia cepacia GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  193 SLADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURCA (Elongation factor Tu OS=Burkholderia cenocepacia (strain AU 1054) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  193 SLADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2
Query:  107 LLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V    K    +    F ++  I+    + G  + P    +      + +++   +    G E+      +  GD   +++    P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  191 ILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVL--CKPGSVKPHTKFKAEAYILTK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVHLPEGTEM------VMPGDNIAMEVHLIVPIAMEEKL------RFAIREGGRTVGAGVVASI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2
Query:  107 LLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V    K    +    F ++  I+    + G  + P    +      + +++   +    G E+      +  GD   +++    P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  191 ILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVL--CKPGSVKPHTKFKAEAYILTK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVHLPEGTEM------VMPGDNIAMEVHLIVPIAMEEKL------RFAIREGGRTVGAGVVASI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_CARHZ (Elongation factor Tu 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 2
Query:  107 LLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +L+ +D ++E    P+R  DKP  +P++DV+ I G GTV  GRVE G +  G    +V    +   T V  +EM  + L EA+ GDN+G  ++ V  K+++RG V   +K    +    F ++V ++    + G  + P  + +      + +++   I    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+ ++E+
Sbjct:  194 ILELMDKVDEYIPTPQRDVDKPFLMPVEDVFTITGRGTVATGRVERGRITIGEEVEIVGLMDAPRKTVVTGLEMFRKVLDEAVAGDNIGALLRGVDRKEIERGQVL--AKPGTIKPHRKFFAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVIHLPEGVEM------VMPGDNVKIHIELITPIAIEEGL------RFAIREGGRTVGAGVVTAIEE 400          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 67/256 (26.17%), Postives = 116/256 (45.31%), Query Frame = 2
Query:   17 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + +P V +S     EGD         +W  G ++LD +    +NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK      +V       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ +E         +FA+R+  +TV  G +  + K
Sbjct:  168 DDLPVVKVSALKALEGDK--------EW--GQSVLDLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIVGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMTVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_CARHZ (Elongation factor Tu 1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 2
Query:  107 LLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +L+ +D ++E    P+R  DKP  +P++DV+ I G GTV  GRVE G +  G    +V    +   T V  +EM  + L EA+ GDN+G  ++ V  K+++RG V   +K    +    F ++V ++    + G  + P  + +      + +++   I    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+ ++E+
Sbjct:  194 ILELMDKVDEYIPTPQRDVDKPFLMPVEDVFTITGRGTVATGRVERGRITIGEEVEIVGLMDAPRKTVVTGLEMFRKVLDEAVAGDNIGALLRGVDRKEIERGQVL--AKPGTIKPHRKFFAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVIHLPEGVEM------VMPGDNVKIHIELITPIAIEEGL------RFAIREGGRTVGAGVVTAIEE 400          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: CYSN_SODGM (Sulfate adenylyltransferase subunit 1 OS=Sodalis glossinidius (strain morsitans) GN=cysN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 64/238 (26.89%), Postives = 104/238 (43.70%), Query Frame = 2
Query:   23 VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-NHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG 733
            + FVP+S  EGDN+      + WY GPTLLD L+ +        +P R P+Q V +         G V  GVL+ G  V   PSG+T+ +  +      L EA  G+ V   +K+    D+ RG +  ++  +   E  N    V+ M   P   G  +   +    +   V   +    I+  + +  +  P    NG  G+V++   +PM+++ ++D P  G     D    V VG
Sbjct:  200 ITFVPLSALEGDNVAALGKAMPWYNGPTLLDVLETVEVINLNEQQPARFPVQYVNRPNLDFRGYAGTVAAGVLRVGQAVKVLPSGVTSTISRIVTFDGDLTEAWAGEAVTLVLKDEV--DISRGDLLVDA-GETLTEVQNAQVDVVWMTEQPLVAGQSFDIKIAGKKTRARVDNIQYQVDINTLTQRVADSLP---LNG-IGLVELAFDEPMILDKYADNPTTGGMIFIDRLSNVTVG 430          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_XYLFT (Elongation factor Tu OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tufA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 61/218 (27.98%), Postives = 106/218 (48.62%), Query Frame = 2
Query:  107 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD +I  P+R  D+P  +P++DV+ I G GTV  GR+E GV+K G    +V   P+  T  V  VEM  + L +   GDN G  ++     +++RG V   +K    +    F ++V +++   + G  + P  + +T    ++ +++  K+    G E+      +  GD   V +    P+ +          RFA+R+  +TV  GV+  V
Sbjct:  194 LAEALDTHIPNPERAIDRPFLMPVEDVFSISGRGTVVTGRIECGVIKVGDEVEIVGIRPTSKTI-VTGVEMFRKLLDQGQAGDNAGLLLRGTKRDEVERGQVL--AKPGCIKAHKEFEAEVYVLSK--EEGGRHTPFFNGYTPQFYMRTTDITGKVCLPEGVEM------VMPGDNVKVTVSLINPVAMGEGQ------RFAIREGGRTVGAGVVSKV 394          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BURCH1.038e-1328.77Elongation factor Tu OS=Burkholderia cenocepacia (... [more]
EFTU_BURCE1.038e-1328.77Elongation factor Tu OS=Burkholderia cepacia GN=tu... [more]
EFTU_BURCA1.038e-1328.77Elongation factor Tu OS=Burkholderia cenocepacia (... [more]
EFTU_BRASO1.038e-1327.60Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB1.038e-1327.60Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU2_CARHZ1.038e-1326.91Elongation factor Tu 2 OS=Carboxydothermus hydroge... [more]
EFTU1_STRAW1.038e-1326.17Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
EFTU1_CARHZ1.038e-1326.91Elongation factor Tu 1 OS=Carboxydothermus hydroge... [more]
CYSN_SODGM1.038e-1326.89Sulfate adenylyltransferase subunit 1 OS=Sodalis g... [more]
EFTU_XYLFT1.356e-1327.98Elongation factor Tu OS=Xylella fastidiosa (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
back to top