DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 68/247 (27.53%), Postives = 116/247 (46.96%), Query Frame = 2
Query:   47 FEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            F+GDN  + R  +L   +G          LL ALD+ I EP R  DKP  + ++DV+ I G GTV  GR+E GV+K G    ++ F  +  +  V  VEM  + L +   GDNVG  ++ V  ++++RG V   +K         FT +V ++    + G  + P    +     ++ +++   ++      L +  K +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  165 FDGDNAPVVRGASLPALQGDPKWEETIQQLLSALDSYIPEPVRDIDKPFLMAIEDVFSIKGRGTVATGRIERGVIKVGDEVQIIGFKDTKKSV-VTGVEMFRKLLDQGQAGDNVGCLLRGVEKEEIERGQVL--AKPGSITPHTKFTGEVYVLKK--EEGGRHTPFFTNYRPQFYIRTTDVTGTVN------LPEGVKMVMPGDNITMTIELIAPVALEEQM------RFAIREGGKTVGAGVVTKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 70/256 (27.34%), Postives = 118/256 (46.09%), Query Frame = 2
Query:   17 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEL---VTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +++P V +SG    EGD+  E        K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G +  G    +V    + LTT V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  +V ++    + G  + P    +     ++ +++   +T      G  +E     +  GD   +      P+ +E         RFA+R+  +T+  GV+  + K
Sbjct:  166 DEIPIVQVSGLKALEGDSEWEG-------KVEELMKAVDASIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTT-VTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKKGSITPHTQFEGEVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSSVE----MVMPGDRIKMTGELICPVAIEQGM------RFAIREGGRTIGAGVVSKIIK 399          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 68/252 (26.98%), Postives = 115/252 (45.63%), Query Frame = 2
Query:   17 EKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEL---VTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            + +P V +SG +  +   E    +D      L+DA+D +I EP+R  +KP  + ++DV+ I G GTV  GR+E G +K G    +V    S  TT V  VEM  + L E L GDN G  ++ +  +D++RG V    K         F  QV ++    + G  + P    +     ++ +++   +T      G  +E     +  GD   +      P+ +E         RFA+R+  +T+  GV+  +
Sbjct:  166 DDIPIVQVSGLKAIEGEAEWEAKID-----ELMDAVDTSIPEPEREIEKPFLMAVEDVFSITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTT-VTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMVL--VKPGSITPHTKFEGQVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVE----MVMPGDNIKMTGELICPVAIEQGM------RFAIREGGRTIGAGVVSKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 65/245 (26.53%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   38 ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG--LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSV 748
            I     +  I+R  N    K   L+DA+D  I  P+R  +K   + ++DV+ I G GTV  GR+E GV+K G  V     G   TT +  +EM  + L E   GDNVG  ++ V  +D++ G V   S+        NF S+V ++      G  + P    +     V+ +++   I + +              D  +V+M+     +  T     P+      RFA+R+  +T+  GV+  +
Sbjct:  179 IEAISSNPAIKRGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIEAGMVL--SEPGTITPHTNFESEVYVLTK--DEGGRHTPFFTGYRPQFYVRTTDVTGAITQFTA------------DDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKI 407          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L+ A+D  I +P RP+DKP  +P++DV+ I G GTV  GR+ETG++K G  V     GL     T V  VEM  + L +   GDN+G  ++ +  ++++RG V   +K         F+++V +++     G  + P    +      + +++  ++    G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  + K
Sbjct:  194 LMAAVDAYIPQPPRPTDKPFLMPVEDVFSISGRGTVVTGRIETGIIKVGEEVEI--IGLKDTQKTTVTGVEMFRKLLDQGEAGDNIGALIRGIKREEVERGQVL--AKPGSVTPHTEFSAEVYVLSK--DEGGRHTPFFANYRPQFYFRTTDVTGEVVLPEGTEM------VMPGDNVTLAVKLIAPIAMDEGL------RFAIREGGRTVGSGVVSKITK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 61/218 (27.98%), Postives = 107/218 (49.08%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+ A+D  I +P+RP D+P  +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V    K    +    F ++  I+    + G  + P    +      + +++   +   +G E+      +  GD   +++    P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  194 LMKAVDAYIPQPERPVDQPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVL--CKPGSVKPHTKFKAEAYILTK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVHLPAGTEM------VMPGDNVAMEVHLIVPIAMEEKL------RFAIREGGRTVGAGVVASI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 68/255 (26.67%), Postives = 115/255 (45.10%), Query Frame = 2
Query:   11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + E+ P V +S     EGD    +S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   P    T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  165 FDEEAPVVRVSALKALEGDPKWVKSVE-------ELMEAVDASIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPETTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTDISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_HUMAN (Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 74/254 (29.13%), Postives = 117/254 (46.06%), Query Frame = 2
Query:    5 GYYPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFS---ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 739
            GY  E+ P +    +   EG     R   L       LLDA+D  I  P R  +KP  LP++ VY + G GTV  G +E G+LK G    +      + T V  +EM H++L+ A  GDN+G  V+ +  +DL+RG V    K    +      +QV I++   + G  + P +   +  + V FS   ++  +I     KEL    + LK        +I  +PM++E         RF +RD  +T+  G++
Sbjct:  207 GYKGEETPVIVGSALCALEG-----RDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVM--VKPGSIKPHQKVEAQVYILSK--EEGGRHKPFV---SHFMPVMFSLTWDMACRIILPPEKELAMPGEDLK------FNLILRQPMILEKGQ------RFTLRDGNRTIGTGLV 436          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_CHRVO (Elongation factor Tu OS=Chromobacterium violaceum GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 65/219 (29.68%), Postives = 103/219 (47.03%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD+ I  P+R  DKP  LP++DV+ I G GTV  GRVE G++K G  +     GL   VK+    VEM  + L +   GDNVG  ++    +D++RG V   +K         F + V +++     G  + P    +      + +++   I    G E+      +  GD   +K+    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDSYIPTPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEELEI--VGLKDTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVL--AKPGTITPHTKFEASVYVLSK--DEGGRHTPFFANYRPQFYFRTTDVTGAISLAEGVEM------VMPGDNVEIKVELIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_BURVG (Elongation factor Tu OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 63/218 (28.90%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIKPTVKTT-CTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SORC51.356e-1327.53Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_PROMA1.356e-1327.34Elongation factor Tu OS=Prochlorococcus marinus GN... [more]
EFTU_PROM31.356e-1326.98Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_ODOSI1.356e-1326.53Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_NOVAD1.356e-1327.15Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_NITHX1.356e-1327.98Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_MYCS21.356e-1326.67Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]
EFTU_HUMAN1.356e-1329.13Elongation factor Tu, mitochondrial OS=Homo sapien... [more]
EFTU_CHRVO1.356e-1329.68Elongation factor Tu OS=Chromobacterium violaceum ... [more]
EFTU_BURVG1.356e-1328.90Elongation factor Tu OS=Burkholderia vietnamiensis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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