DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBT (Elongation factor Tu OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+ ALD+ I EP+R  DK   +P++DV+ I G GTV  GRVE G++K G  V        + T V  VEM  + L E   G+N G  ++    ++++RG V   +K    +    F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++      P  RFA+R+  +TV  GV+  V
Sbjct:  194 LVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVL--AKPGTIKPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEM------VMPGDNVEMSVELIHPIAMD------PGLRFAIREGGRTVGAGVVAKV 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACIB3 (Elongation factor Tu OS=Acinetobacter baumannii (strain AB307-0294) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L+ ALD+ I EP+R  DK   +P++DV+ I G GTV  GRVE G++K G  V        + T V  VEM  + L E   G+N G  ++    ++++RG V   +K    +    F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++      P  RFA+R+  +TV  GV+  V
Sbjct:  194 LVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVL--AKPGTIKPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEM------VMPGDNVEMSVELIHPIAMD------PGLRFAIREGGRTVGAGVVAKV 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU3_STRRA (Elongation factor Tu-3 OS=Streptomyces ramocissimus GN=tuf3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 71/254 (27.95%), Postives = 115/254 (45.28%), Query Frame = 2
Query:    5 GYYPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYP--PLGRFAVRDMRQTVAVGVIKSV 748
            GY  +  P V +SG    EGD     S          LLDA+D  +  P+R  D P  LP+++V  I G GTV  G VE G ++ G  V    +GL T V  +E   + + EA  GDNV   ++ V    ++RG V +       R  + F++QV +++   + G    PV   +     ++ +++V  +D                G+ G+ +   T  M+VE   + P  P   FA+R+  +TV  G + ++
Sbjct:  161 GYGGDGAPVVRVSGLKALEGDPKWTASIE-------ALLDAVDTYVPMPERYVDAPFLLPVENVLTITGRGTVVTGAVERGTVRVGNRVEVLGAGLETVVTGLETFGKPMDEAQAGDNVALLLRGVPRDAVRRGHVVAAPGSVVPR--SRFSAQVYVLS--AREGGRTTPVTSGYRPQFYIRTADVVGDVDL---------------GEVGVARPGETVSMIVELGREVPLEPGLGFAIREGGRTVGAGTVTAL 388          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU3_STRCO (Elongation factor Tu-3 OS=Streptomyces coelicolor GN=tuf3 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 79/257 (30.74%), Postives = 120/257 (46.69%), Query Frame = 2
Query:    5 GYYPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG-FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYP---PLGRFAVRDMRQTVAVGVIKSVE 751
            GY  + VP V +SG    EGD     S          LLDA+D  +  P+R  D P  LP+++V  I G GTV  G VE G ++ G  V    + + T V  +E   + ++EA  GDNV   ++ VA   ++RG  VA+     PAR    F ++V +++   + G    P+   +     ++ +++V  +D   G+E    P     GD        T  M VE   D P    LG FA+R+  +TV  G + +VE
Sbjct:  164 GYGGDAVPVVRVSGLKALEGDPRWTASVE-------ALLDAVDTYVPMPERYLDAPFLLPVENVLTITGRGTVVTGAVERGTVRVGDRVEVLGASVETVVTGLETFGKPMEEAQAGDNVALLLRGVARDTVRRGQVVAAPGSVVPAR---RFRARVYVLS--AREGGRSTPLTTGYRPQFYIRTADVVGDVD--LGEEAVARP-----GD--------TVTMTVELGRDVPLETGLG-FAIREGGRTVGAGTVTAVE 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU2_ALKMQ (Elongation factor Tu 2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 60/218 (27.52%), Postives = 103/218 (47.25%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DA+D  I EP R +DKP  +P++DV+ I G GTV  GR+E G++K      +V    +     V  VEM  + L +   GDNVG  ++ +   +++RG V   +K    +    F ++V ++    + G  + P  D +      + +++   I    G E+      +  GD   +++    P+  E         RFA+R+  +TV  GV+ S+
Sbjct:  194 LFDAIDTWIPEPVRDTDKPFLMPVEDVFSITGRGTVATGRIERGIVKVQEEISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVL--AKTGSIQPHTKFMAEVYVLKK--EEGGRHTPFFDGYRPQFYFRTTDVTGSIKLPEGVEM------VMPGDNITMEIELISPIATEEGL------RFAIREGGRTVGAGVVASI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 60/220 (27.27%), Postives = 103/220 (46.82%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L+ A+D  I EP+R  DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   +K+   +P+ +E         +FA+R+  +TV  G +  + K
Sbjct:  194 LMKAVDEAIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMKVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESR (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMKVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESM (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMKVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU1_ALKMQ (Elongation factor Tu 1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.356e-13
Identity = 60/218 (27.52%), Postives = 103/218 (47.25%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DA+D  I EP R +DKP  +P++DV+ I G GTV  GR+E G++K      +V    +     V  VEM  + L +   GDNVG  ++ +   +++RG V   +K    +    F ++V ++    + G  + P  D +      + +++   I    G E+      +  GD   +++    P+  E         RFA+R+  +TV  GV+ S+
Sbjct:  194 LFDAIDTWIPEPVRDTDKPFLMPVEDVFSITGRGTVATGRIERGIVKVQEEISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVL--AKTGSIQPHTKFMAEVYVLKK--EEGGRHTPFFDGYRPQFYFRTTDVTGSIKLPEGVEM------VMPGDNITMEIELISPIATEEGL------RFAIREGGRTVGAGVVASI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ZYMMO (Elongation factor Tu OS=Zymomonas mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 67/224 (29.91%), Postives = 112/224 (50.00%), Query Frame = 2
Query:  104 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGD--AGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            +L+ A+D  I +P+RP DK   +P++DV+ I G GTV  GRVETG++K G  V     GL     T V  VEM  + L +   GDN+G  ++  A  +++RG V   +K         F ++V +++     G  + P    +      + +++  +I       L ++ + +  GD  A  VK+I   P+ ++      P  RFA+R+  +TV  GV+ S+ K
Sbjct:  194 SLMAAVDEYIPQPERPLDKSFLMPIEDVFSISGRGTVVTGRVETGIVKVGEEVEI--VGLRDTKKTTVTGVEMFRKLLDQGQAGDNIGALLRGTARTEVERGQVL--AKPGSITPHTEFKAEVYVLSK--DEGGRHTPFFANYRPQFYFRTTDVTGEI------TLPEDVEMVMPGDNIAFGVKLI--APIAMD------PGLRFAIREGGRTVGAGVVSSIIK 397          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ACIBT1.356e-1328.11Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU_ACIB31.356e-1328.11Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU3_STRRA1.356e-1327.95Elongation factor Tu-3 OS=Streptomyces ramocissimu... [more]
EFTU3_STRCO1.356e-1330.74Elongation factor Tu-3 OS=Streptomyces coelicolor ... [more]
EFTU2_ALKMQ1.356e-1327.52Elongation factor Tu 2 OS=Alkaliphilus metalliredi... [more]
EFTU1_STRCO1.356e-1327.27Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_SHESR1.356e-1328.57Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHESM1.356e-1328.57Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_ALKMQ1.356e-1327.52Elongation factor Tu 1 OS=Alkaliphilus metalliredi... [more]
EFTU_ZYMMO1.770e-1329.91Elongation factor Tu OS=Zymomonas mobilis GN=tuf P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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