DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_UREU1 (Elongation factor Tu OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 73/249 (29.32%), Postives = 121/249 (48.59%), Query Frame = 2
Query:   44 GFEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKS 745
            GF+GDN  + R + L   +G          L+DA+D+ I  P+R +DKP  L ++DV+ I G GTV  GRVE G LK    V     GL     T V  +EM  ++L +A  GDN G  ++ +  +D++RG V    K    +    FT++V I+    + G  + P++  +      + +++   I   +G +L      +  GD   + +    P+ +E  S      +F++R+  +TV  G VIK+
Sbjct:  162 GFDGDNTPVIRGSGLKALEGDPVWEAKIDELMDAVDSWIPLPERSTDKPFLLAIEDVFTISGRGTVVTGRVERGTLKVNDEVEI--VGLKDTQKTVVTGIEMFRKSLDQAEAGDNAGILLRGIKKEDVERGQVL--VKPGSIKPHRTFTAKVYILKK--EEGGRHTPIVSGYRPQFYFRTTDVTGAISLPAGVDL------VMPGDDVEMTVELIAPVAIEDGS------KFSIREGGKTVGHGSVIKT 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 67/250 (26.80%), Postives = 114/250 (45.60%), Query Frame = 2
Query:   17 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEL---VTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            + +P V +SG +    IE     +  K   L+ A+D+ I EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G  +       T  T V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  QV ++    + G  + P    +     ++ +++   +T      G  +E     +  GD   +      P+ +E         RFA+R+  +T+  GV+  +
Sbjct:  166 DDIPVVQVSGLKA---IEGEAEWE-AKIEELMAAVDSSIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKPGSITPHTKFEGQVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVE----MVMPGDNIQMTGELICPVAIEQGM------RFAIREGGRTIGAGVVSKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS3 (Elongation factor Tu OS=Synechococcus sp. (strain CC9311) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 69/251 (27.49%), Postives = 116/251 (46.22%), Query Frame = 2
Query:   17 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEL---VTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-RFAVRDMRQTVAVGVIKSV 748
            + +P V +SG +    IE     +  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G  + V        T V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  QV ++    + G  + P    +     ++ +++   +T      G  +E     +  GD   +      P+ +E       LG RFA+R+  +T+  GV+  +
Sbjct:  166 DDIPVVQVSGLKA---IEGEAEWE-AKIEELMAAVDASIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVGEEVEVVGIREPRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKPGSITPHTKFEGQVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVE----MVMPGDNIQMTGELICPVAME-------LGMRFAIREGGRTIGAGVVSKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 65/253 (25.69%), Postives = 114/253 (45.06%), Query Frame = 2
Query:   17 EKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSV 748
            + +P V +SG +  +   E    +D      L+ A+D NI EP R  DKP  + ++DV+ I G GTV  GR+E G++K G  +       T  + V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  +V ++    + G  + P    +     ++ +++  +I   + +            D G V+M+     +  T     P+      RFA+R+  +T+  GV+  +
Sbjct:  166 DDIPVVQVSGLKAIEGEAEWEAKID-----ELMAAVDANIPEPVREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKSTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKPGSITPHTKFEGEVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTDR------------DGGNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVTKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRZT (Elongation factor Tu OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRZP (Elongation factor Tu OS=Streptococcus pneumoniae (strain P1031) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRZJ (Elongation factor Tu OS=Streptococcus pneumoniae (strain JJA) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRR6 (Elongation factor Tu OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRPN (Elongation factor Tu OS=Streptococcus pneumoniae GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRPJ (Elongation factor Tu OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_UREU11.770e-1329.32Elongation factor Tu OS=Ureaplasma urealyticum ser... [more]
EFTU_SYNSC1.770e-1326.80Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNS31.770e-1327.49Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR31.770e-1325.69Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STRZT1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZP1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZJ1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRR61.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRPN1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae G... [more]
EFTU_STRPJ1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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