DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRPI (Elongation factor Tu OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRP7 (Elongation factor Tu OS=Streptococcus pneumoniae (strain 70585) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRP4 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRP2 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STRGC (Elongation factor Tu OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 59/221 (26.70%), Postives = 109/221 (49.32%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K    +     G+  E++      VEM  + L E L GDNVG  ++ +   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   +++    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEI--VGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIEVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_SODGM (Elongation factor Tu OS=Sodalis glossinidius (strain morsitans) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 66/217 (30.41%), Postives = 103/217 (47.47%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V   G    T T    VEM  + L E   G+NVG  ++     D++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  192 LAEALDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVL--AKPGSIKPHTQFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMVVNLIAPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/256 (25.00%), Postives = 123/256 (48.05%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + +++  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQWVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICRI (Elongation factor Tu OS=Rickettsia rickettsii GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/256 (25.00%), Postives = 123/256 (48.05%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + +++  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQWVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICCN (Elongation factor Tu OS=Rickettsia conorii GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/256 (25.00%), Postives = 122/256 (47.66%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + + +  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLSADKQMVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_OLICO (Elongation factor Tu OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/221 (27.15%), Postives = 107/221 (48.42%), Query Frame = 2
Query:  107 LLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V    K    +    F ++  I+    + G  + P    +      + +++   +    G E+      +  GD   +++    P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  191 VLELMKNVDEYIPQPERPVDQPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVL--CKPGSVKPHTKFKAEAYILTK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVHLPEGTEM------VMPGDNIAMEVHLIVPIAMEEKL------RFAIREGGRTVGAGVVASI 394          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRPI1.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRP71.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRP41.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae s... [more]
EFTU_STRP21.770e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae s... [more]
EFTU_STRGC1.770e-1326.70Elongation factor Tu OS=Streptococcus gordonii (st... [more]
EFTU_SODGM1.770e-1330.41Elongation factor Tu OS=Sodalis glossinidius (stra... [more]
EFTU_RICSI1.770e-1325.00Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]
EFTU_RICRI1.770e-1325.00Elongation factor Tu OS=Rickettsia rickettsii GN=t... [more]
EFTU_RICCN1.770e-1325.00Elongation factor Tu OS=Rickettsia conorii GN=tuf ... [more]
EFTU_OLICO1.770e-1327.15Elongation factor Tu OS=Oligotropha carboxidovoran... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
back to top