DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 60/218 (27.52%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT V  VEM  + L +   GDNVG  ++    ++++RG V   ++         F +++ ++    + G  + P    +     V+ +++   I    G E+      +  GD   +      P+ +E  +      RFA+R+  +TV  GV+  +
Sbjct:  197 LMEAVDEYIPTPERDIDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDEIEIVGLRPTQKTT-VTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGQVL--AQPGTITPHTKFEAEIYVLTK--EEGGRHTPFFSGYRPQFYVRTTDVTGTITLPEGVEM------VMPGDNVKINAELIAPIALEEGT------RFAIREGGRTVGAGVVSKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCUA (Elongation factor Tu OS=Mycobacterium ulcerans (strain Agy99) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 67/255 (26.27%), Postives = 114/255 (44.71%), Query Frame = 2
Query:   11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + E  P V +S     EGD     S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++       +V   P+   T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  165 FDEDAPVVRVSALKALEGDPKWVESVE-------QLMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDDGL------RFAIREGGRTVGAGRVVKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 67/255 (26.27%), Postives = 114/255 (44.71%), Query Frame = 2
Query:   11 YPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + E  P V +S     EGD     S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++       +V   P+   T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++         RFA+R+  +TV  G +  + K
Sbjct:  165 FDEDAPVVRVSALKALEGDPKWVESVE-------QLMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDDGL------RFAIREGGRTVGAGRVVKIIK 396          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_KLEP7 (Elongation factor Tu OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tufA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 71/246 (28.86%), Postives = 112/246 (45.53%), Query Frame = 2
Query:   38 ISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            +   EGD      +IE + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       T  T    VEM  + L E   G+NVG  ++ +  ++++RG V   +K         F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  176 LKALEGDAEWEAKIIELAGHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETAKTTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTINPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/220 (29.09%), Postives = 104/220 (47.27%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            LLDA D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT    VEM  + L +   GDN+G  ++     D++RG V +  K     +   F ++V +++   + G  + P    +      + +++   I    G E+      +  GD     +    P+ +E         RFA+R+  +TV  GV+  + +
Sbjct:  195 LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEIVGIKPTVKTT-CTGVEMFRKLLDQGEAGDNIGALLRGTKRDDVERGQVLAAPKSITPHK--KFKAEVYVLSK--EEGGRHTPFFTGYRPQFYFRTTDITGVISLPEGVEM------VMPGDNSQFIVELIAPIAMEAGL------RFAIREGGRTVGSGVVTEINE 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_CLOD6 (Elongation factor Tu OS=Clostridium difficile (strain 630) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 67/237 (28.27%), Postives = 110/237 (46.41%), Query Frame = 2
Query:   53 GDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT-----TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            GD ++E    +D Y           I  P+R +DKP  +P++DV+ I G GTV  GRVE GVLK    V     GLT       V  VEM  + L +A  GDN+G  ++ V   +++RG V   +K    +    FT++V ++    + G  + P  D +      + +++        G E+      +  GD   +++     +VVE         RF++R+  +TVA GV+ ++
Sbjct:  188 GDKIVELFEQIDEY-----------IPAPERDTDKPFLMPVEDVFSITGRGTVATGRVERGVLKVQDEVEL--VGLTEAPRKVVVTGVEMFRKLLDQAQAGDNIGALLRGVQRNEIERGQVL--AKTGSVKAHTKFTAEVYVLKK--EEGGRHTPFFDGYRPQFYFRTTDVTGACKLPEGIEM------VMPGDNVTMEVDLINSIVVEEGL------RFSIREGGRTVASGVVATI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_AZOC5 (Elongation factor Tu OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 59/210 (28.10%), Postives = 100/210 (47.62%), Query Frame = 2
Query:  128 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            I +P+RP D+P  +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT V  +EM  + L +   GDNVG  ++    +D++RG V    K    +    F ++  I+    + G  + P    +      + +++   +    G E+      +  GD   V +    P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  203 IPQPERPVDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIRPTVKTT-VTGIEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVV--CKPGSVKPHTKFKAEAYILTK--EEGGRHTPFFTNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNISVDVQLIVPIAMEEKL------RFAIREGGRTVGAGVVASI 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACTPJ (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/235 (27.23%), Postives = 110/235 (46.81%), Query Frame = 2
Query:   56 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  + K
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_ACTP2 (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.770e-13
Identity = 64/235 (27.23%), Postives = 110/235 (46.81%), Query Frame = 2
Query:   56 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  + K
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_TREDE (Elongation factor Tu OS=Treponema denticola GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 55/198 (27.78%), Postives = 97/198 (48.99%), Query Frame = 2
Query:   11 YPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEK 592
            +PE  P +  S F+   + E +T  D      LL  +D    +P R SDKP  LP++D++ I G GTV  GR+E GV+K      +V   P+  T  V  +EM ++ L E   GDNVG  ++ +  K+++RG V   +K         F +Q+ +++   + G  ++P    +      + +++   ++   G ++ K
Sbjct:  163 FPEDTPIIKGSAFKA--LQEGATAEDTACIEELLKTMDEYFKDPVRDSDKPFLLPIEDIFTIQGRGTVVTGRIERGVIKMNEEVEIVGIKPTKKTV-VTGIEMFNKLLDEGEAGDNVGLLLRGIEKKEVERGQVL--AKPGSIHPHTKFEAQIYVLSK--EEGGRHSPFFSGYRPQFYFRTTDITGTVNLPEGTDMVK 353          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NITSB1.770e-1327.52Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_MYCUA1.770e-1326.27Elongation factor Tu OS=Mycobacterium ulcerans (st... [more]
EFTU_MYCMM1.770e-1326.27Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_KLEP71.770e-1328.86Elongation factor Tu OS=Klebsiella pneumoniae subs... [more]
EFTU_DESDA1.770e-1329.09Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CLOD61.770e-1328.27Elongation factor Tu OS=Clostridium difficile (str... [more]
EFTU_AZOC51.770e-1328.10Elongation factor Tu OS=Azorhizobium caulinodans (... [more]
EFTU_ACTPJ1.770e-1327.23Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_ACTP21.770e-1327.23Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_TREDE2.312e-1327.78Elongation factor Tu OS=Treponema denticola GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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