DY305443

Overview
NameDY305443
Unique NameDY305443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1161
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_STACT (Elongation factor Tu OS=Staphylococcus carnosus (strain TM300) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 59/220 (26.82%), Postives = 106/220 (48.18%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            L+ A+D+ I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G    ++      + T V  VEM  + L  A  GDN+G  ++ VA +D++RG V   +          F + V +++     G  + P    +      + +++   ++   G E+      +  GD   + +    P+ +E  +      RF++R+  +TV  GV+  +++
Sbjct:  192 LMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGITEESMKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVL--AAPGSITPHTKFKADVYVLSK--DEGGRHTPFFTNYRPQFYFRTTDVTGVVNLPEGTEM------VMPGDNVEMTVELIAPIAIEDGT------RFSIREGGRTVGSGVVTEIQQ 395          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICRS (Elongation factor Tu OS=Rickettsia rickettsii (strain Sheila Smith) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 64/256 (25.00%), Postives = 122/256 (47.66%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + + +  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQMVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICRO (Elongation factor Tu OS=Rickettsia rickettsii (strain Iowa) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 64/256 (25.00%), Postives = 122/256 (47.66%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + + +  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQMVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICPU (Elongation factor Tu OS=Rickettsia peacockii (strain Rustic) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 64/256 (25.00%), Postives = 122/256 (47.66%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + + +  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQMVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RICAE (Elongation factor Tu OS=Rickettsia africae (strain ESF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 64/256 (25.00%), Postives = 122/256 (47.66%), Query Frame = 2
Query:    5 GYYPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G  +     GL     T    VEM  + L E   GDNVG  ++    ++++RG V   +K    +    F ++V +++   + G  + P  + +      + +++   I      +L  + + +  GD     +   KP+ ++         +F++R+  +TV  GV+  +
Sbjct:  162 GFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI--VGLKDTQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVL--AKPGSIKPHDKFEAEVYVLSK--EEGGRHTPFTNDYRPQFYFRTTDVTGTI------KLPADKQMVMPGDNATFTVELIKPIAMQEGL------KFSIREGGRTVGAGVVTKI 392          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RALSO (Elongation factor Tu OS=Ralstonia solanacearum GN=tufA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 61/217 (28.11%), Postives = 102/217 (47.00%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD+ I  P+R  D    +P++DV+ I G GTV  GR+E G++K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDSYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRIERGIIKVGEEIEIVGIKATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_RALME (Elongation factor Tu OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 63/218 (28.90%), Postives = 104/218 (47.71%), Query Frame = 2
Query:  107 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 748
            L DALD  I  P+R  D    +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I      EL ++ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRIERGVIKVGEEIEIVGIRPTVKTT-CTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPQDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAK (Elongation factor Tu, chloroplastic OS=Pseudendoclonium akinetum GN=tufA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 66/237 (27.85%), Postives = 108/237 (45.57%), Query Frame = 2
Query:   56 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 754
            D +++   N+D Y           I  P R +DK   + ++DV+ I G GTV  G VE G LK G  V     GL    TT V  +EM  + L E + GDNVG  ++ V   +++RG V   +     +    F +QV I+    + G  + P    +     V+ +++  KI+  +  +   E     +GD   + +   +P+ VE         RFA+R+  +TV  GV+ ++ K
Sbjct:  197 DKILKLMQNVDTY-----------IPTPVRETDKTFLMAVEDVFSITGRGTVATGLVERGTLKTGATVEI--IGLRDTTTTTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDNIQRGMVL--AAPGTIKPHTKFEAQVYILTK--EEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADD-GSEALMATSGDRLKMVVELIQPIAVENGM------RFAIREGGRTVGAGVVSTILK 409          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PROMT (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL2A) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 68/254 (26.77%), Postives = 115/254 (45.28%), Query Frame = 2
Query:   17 EKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSV 748
            + +P V +SG +    IE     DW  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G +  G    +V    + LTT V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  +V ++    + G  + P    +     ++ +++  +I                + D   V+M+     +  T     P+      RFA+R+  +T+  GV+  +
Sbjct:  166 DDIPVVQVSGLKA---IEGEA--DWETKIDDLMTAVDASIPEPEREIDKPFLMAIEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTT-VTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKKGSITPHTKFEGEVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITA------------FTSDDGSNVEMVMPGDRIKMTGELIAPVAIEQGMRFAIREGGRTIGAGVVSKI 397          
BLAST of DY305443 vs. ExPASy Swiss-Prot
Match: EFTU_PHATR (Elongation factor Tu, chloroplastic OS=Phaeodactylum tricornutum GN=tufA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 62/247 (25.10%), Postives = 111/247 (44.94%), Query Frame = 2
Query:   38 ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSVEK 754
            I     +  ++R  N    K   L+DA+D  I  P+R  +K   + ++DV+ I G GTV  GR+E GV+K G  + +       TT +  +EM  + L+E   GDNVG  ++ V  ++++RG V   +K        +F S+V ++      G  + P    +     V+ +++   I + +              D  +V+M+     +  T     P+      RFA+R+  +T+  GV+  + K
Sbjct:  179 IEAITANPTVKRGDNKWVDKIYALMDAVDEYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGENVEIVGVTDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVL--AKPGTITPHTSFESEVYVLTK--DEGGRHTPFFTGYRPQFYVRTTDVTGSITQFTA------------DDGSVVEMVMPGDRIKMTAEFIYPVAIEAGMRFAIREGGRTIGAGVVSKIVK 409          
The following BLAST results are available for this feature:
BLAST of DY305443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STACT2.312e-1326.82Elongation factor Tu OS=Staphylococcus carnosus (s... [more]
EFTU_RICRS2.312e-1325.00Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRO2.312e-1325.00Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICPU2.312e-1325.00Elongation factor Tu OS=Rickettsia peacockii (stra... [more]
EFTU_RICAE2.312e-1325.00Elongation factor Tu OS=Rickettsia africae (strain... [more]
EFTU_RALSO2.312e-1328.11Elongation factor Tu OS=Ralstonia solanacearum GN=... [more]
EFTU_RALME2.312e-1328.90Elongation factor Tu OS=Ralstonia metallidurans (s... [more]
EFTU_PSEAK2.312e-1327.85Elongation factor Tu, chloroplastic OS=Pseudendocl... [more]
EFTU_PROMT2.312e-1326.77Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PHATR2.312e-1325.10Elongation factor Tu, chloroplastic OS=Phaeodactyl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305443 ID=DY305443; Name=DY305443; organism=Citrus sinensis; type=EST; length=1161bp
GGTTGGATACTACCCCGAGAAAGTCCCATTTGTGCCCATCTCTGGTTTCG
AGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGT
CCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTC
AGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCA
TTGGAACTGTTCCAGTGGGTCGCGTTGAGACTGGTGTGCTCAAGCCTGGT
ATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTC
ACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCT
GTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGA
GAAGAGGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGA
AATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAAGGGTTATTTTCTG
TCTTTTTTATTTTCTTTTCTGTTTTTGGTTTGCATCATGGTTTCTGCCAA
ACGCCCTATTTGCTTCCACCATTTTGCTGTTGAACAAATAGGGAAGTTTC
CTTTCTGCTTAACTGGCTGGTCGGGGGGGTTCGGAATTTTTTAATTTTGA
AATTTGGTTAAAAACCCCTAATTTGATTTGTAAAGTTTTAAAAAACCAAT
TGGCGGGAATTCAAAAATTGGGGGGTTTTTATTTTTTTGTAAAACCCTTT
TTTTAACCTCTTTTTTAATTTTTTTCCTTTTTTTAATTTTTAAAAAAACA
CCAATATTTTT
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