DY259695

Overview
NameDY259695
Unique NameDY259695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.394e-28
Identity = 85/257 (33.07%), Postives = 124/257 (48.25%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV-----NGLEKI 851
            V V +L+G         + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   ES+ KT   L V K +   AD E+AKD   I+ G+ K+R R+Y   +  LVV   +    V A RN+ GV+V+    L+ + +APG  +GR+     N +EK+
Sbjct:    3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACDAVAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKL 248          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.394e-28
Identity = 84/246 (34.15%), Postives = 120/246 (48.78%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT   L V   +   AD E+AKD   I+ G+ K+R R+Y   K  LVV   +    V A RN+ GV+V+    L+ + +APG  +GR+
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKYKKPKSVLVVV-GDACDAVAASRNLAGVDVITANDLSAIHIAPGTMAGRL 237          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.166e-27
Identity = 81/246 (32.93%), Postives = 120/246 (48.78%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ GV+V     +N   LAPG   GR+
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRL 236          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.166e-27
Identity = 81/246 (32.93%), Postives = 120/246 (48.78%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ GV+V     +N   LAPG   GR+
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRL 236          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 2.067e-26
Identity = 77/231 (33.33%), Postives = 113/231 (48.92%), Query Frame = 3
Query:  144 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V     + L  A + +PGV+VV    L++L LAPGGH GR+
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRL 252          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.527e-26
Identity = 79/245 (32.24%), Postives = 120/245 (48.98%), Query Frame = 3
Query:  132 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV-----NGLEKI 851
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D  +AK+   IR GKGKMR R+Y   +  LVV   +    + A RN+PGV+V+  + L ++ LAPGG +GR+     + LEK+
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVVV-GDKCNAILASRNLPGVDVITAKDLGIIHLAPGGVAGRLTVWTESALEKL 247          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.134e-24
Identity = 79/245 (32.24%), Postives = 118/245 (48.16%), Query Frame = 3
Query:   99 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            TV+ L+GD A +    V LP V +   RPD++         N  Q     + AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  LVV S + +    A RN+ G +V   + +N+  LAPG  +GR+
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVVTSDDQS---LAARNLAGSDVATADEVNVEDLAPGTQAGRL 234          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.254e-23
Identity = 83/247 (33.60%), Postives = 118/247 (47.77%), Query Frame = 3
Query:  147 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGNMCRG--GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRVNGLEKIGL 857
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R               N+ +   G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL+V +    +L KA  NIPG+++ +V  LN+  LAPG   GR+  + K  L
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDAL 258          
BLAST of DY259695 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 9.938e-21
Identity = 76/245 (31.02%), Postives = 116/245 (47.35%), Query Frame = 3
Query:   99 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVKVERLNLLKLAPGGHSGRV 833
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y   + AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y      L V S E +    A RN+ G +V     +N   LAPGG  GR+
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKYRRPASILFVTSDEPS---TAARNLAGADVATASEVNTEDLAPGGAPGRL 232          
The following BLAST results are available for this feature:
BLAST of DY259695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METVS8.394e-2833.0750S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_METM68.394e-2834.1550S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_HALSA4.166e-2732.9350S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS34.166e-2732.9350S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_AERPE2.067e-2633.3350S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_METJA3.527e-2632.2450S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_NATPD1.134e-2432.2450S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_NANEQ1.254e-2333.6050S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA9.938e-2131.0250S ribosomal protein L4P OS=Haloarcula marismortu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3AH07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259695 ID=DY259695; Name=DY259695; organism=Citrus sinensis; type=EST; length=1275bp
CTTAACGCTGCGTCTCTGCCCCCTTCCCCATATATCCCCCAACAGAAAAA
AACACACACAAACCAAAACCAATGGCCGCCGCCGCCCGTCCTCTTGTAAC
CGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCC
CCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTC
GTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCTTACGCCGTTTCCAA
GAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCG
TCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGGCCAG
GGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAA
GATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATATG
CCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCC
CGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGA
TTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCTTAAAGTTCTGAAGC
AGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATT
CGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTACATTTCTCGCAAGGG
CCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTA
GGAACATTCCCGGTGTTGAGGTTGTGAAAGTAGAGAGATTGAACTTGTTG
AAGCTGGCGCCGGGGGGCCACTCTGGGCGGGTTAATGGTTTGGAAAAAAT
CGGGCTTTTGAGAAAGCTTGAAGAAAATTAAGGGAAAGGTTGAAAAAGGG
GTCCCCAAAAAAAAAAAAGGGGTATGCGGCTGCCCCCGTCCCAAAAAGGT
CAAACCCCTGAATTGGGTAAGAAATATTAAACTCCGAATAAAGGGGGGCA
GCCCGGGTTGCTAGGGCAAAAAAAAAAACGAAGGGGCTAAAAAAAGGGCC
CCGAAAACAAAAAAAAAACACCCCCCCCCAACAAACCTTTTCAACACTTC
TCTGTGTTGAAGAGTTTCAACTCCCACTTATAGTTTAAAAAACAGGCACA
CCCATCAGGGAATTTTCCACACATTCTTTTGGGTGCTGAAAGAGTACCAC
CAAAACGCGGACGTATTACTCCATCTCGATCGCAAGCCAAGAAGGGAGAT
GAACACACACCTCCCGCACCCTACA
back to top