DY257706

Overview
NameDY257706
Unique NameDY257706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1182
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.696e-33
Identity = 92/260 (35.38%), Postives = 133/260 (51.15%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDEI 875
            V V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V  A+   +V+  RN PGV+VV V+ L +  LAPG   GR  +WTK A E+L EI
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVV-AKNEGIVQGARNHPGVDVVTVDNLGVEYLAPGTHPGRLTIWTKGAIERLREI 253          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.696e-33
Identity = 85/240 (35.42%), Postives = 125/240 (52.08%), Query Frame = 3
Query:  153 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDE 872
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT   L+  K +G   D ++AKD   IR G GK+R R+Y   K  LVV S      VKA +N+PGV+V++   L ++ +APG   GR  +WT+SA E++++
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVVVSG-ACDAVKASKNLPGVDVISANDLGVMHIAPGADSGRLTLWTESAVEEINK 250          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.599e-33
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 3
Query:  147 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDEI 875
            + LP V     RPD++         +  QP      AG +   E+ G G +++R+ R+     +     AF    RGGR   P K+ +     IN  +KR              LV ARGH I+ VP++PL+V D  + V+KT    ++ K++G + D  +AK+  G+R GKGKMR RRY   KGPL+V   +   +V   RN PGV+VV V+ L +  LAPG   GR  VWT SA E+L E+
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLREL 253          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.599e-33
Identity = 89/243 (36.63%), Postives = 124/243 (51.03%), Query Frame = 3
Query:  147 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDEI 875
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D E+AK+  GIR GKGKMR RRY   KGPL+V   +   +V   RN PGV+VV V+ L +  LAPG   GR  VWT SA E+L EI
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLKEI 253          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.599e-33
Identity = 89/258 (34.50%), Postives = 130/258 (50.39%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLD 869
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD EKAKD   I+ G+ K+R R+Y   +  LVV   +  + + A RN+ GV+V+    L+ + +APG + GR  +WT++A EK++
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVVV-GDACEAIAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKIN 249          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.338e-32
Identity = 86/243 (35.39%), Postives = 124/243 (51.03%), Query Frame = 3
Query:  147 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDEI 875
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G+R GKGKMR RRY   KGPL+V   +   +V   RN PGV+VV V+ L +  LAPG   GR  VWT SA E+L EI
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLREI 253          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.338e-32
Identity = 89/258 (34.50%), Postives = 131/258 (50.78%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLD 869
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD  +AKD   I+ G+ K+R R+Y   K  LVV   +  + + A RN+ GV+V+    L+ + +APG + GR  +WT++A EK++
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKIKAGRAKLRGRKYKKPKSVLVVV-GDACEAIAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTENAIEKIN 249          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.748e-32
Identity = 91/258 (35.27%), Postives = 129/258 (50.00%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLD 869
            V V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT   L V   +   AD E+AKD   I+ G+ K+R R+Y   K  LVV   +    V A RN+ GV+V+    L+ + +APG + GR  +WT+SA EKL+
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKYKKPKSVLVVV-GDACDAVAASRNLAGVDVITANDLSAIHIAPGTMAGRLTLWTESAIEKLN 249          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.748e-32
Identity = 86/256 (33.59%), Postives = 133/256 (51.95%), Query Frame = 3
Query:  102 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLD 869
            V+++EG +A D    + LP +     RPD++      +    RQP+     AG  +SA  WG+GR  S +PR+  G      + A     +GGR   P    +   ++IN  +K+              L+ +RGH+ E    +PL+  D  E++ KT   +  L  IG Y+D E++K+S+ +R G+GK+R RRY  RK  L+V S       +A RN+ GV+VV V++L +  LAPG   GR  VWT+SA  +L+
Sbjct:    5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAGVDVVTVDQLNVEHLAPGMQAGRLTVWTESAVIRLE 246          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.981e-32
Identity = 84/259 (32.43%), Postives = 136/259 (52.51%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDE 872
            V + S+ G+   +    + LP++   S+R D++      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  ++ +  IN  +++               V  RGH+      +P+VV D+   ++KT  A+ +LK IG Y D  ++K+ + IR G+GKMRNRRY   K  L+V     +  +K F+++PGV+V +++ L++ KLAPGG+ GR  V+T+SA EKL E
Sbjct:    5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV--GTDSVSLKVFKSLPGVDVASMDSLSIRKLAPGGVGGRLTVYTESAIEKLRE 252          
The following BLAST results are available for this feature:
BLAST of DY257706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PYRKO2.696e-3335.3850S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_META32.696e-3335.4250S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_PYRFU4.599e-3336.2150S ribosomal protein L4P OS=Pyrococcus furiosus G... [more]
RL4_PYRAB4.599e-3336.6350S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]
RL4_METM54.599e-3334.5050S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_PYRHO1.338e-3235.3950S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_METM71.338e-3234.5050S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METM61.748e-3235.2750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METB61.748e-3233.5950S ribosomal protein L4P OS=Methanoregula boonei ... [more]
RL4_THEVO2.981e-3232.4350S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257706 ID=DY257706; Name=DY257706; organism=Citrus sinensis; type=EST; length=1182bp
CTTAACGCTGCGGCTCTGCCCCCTTCCCCATATATCCCCCAACAGAAAAA
AACACACACAAACCAAAACCAATGGCCGCCGCCGCCCGTCCTCTTGTAAC
CGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCC
CCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTC
GTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCTTACGCCGTTTCCAA
GAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCG
TCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGGCCAG
GGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAA
GATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATATG
CCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCC
CGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGA
TTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCTTAAAGTTCTGAAGC
AGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATT
CGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTACATTTCTCGCAAGGG
CCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTA
GGAACATTCCCGGTGTTGAAGTTGTGAATGTTGAGAGATTGACCTTGTTG
AAGCTGGCGCCGGGTGGCATCTTTGGGCGGTTTATTGTTTGGACTAAATC
GGCTTTTGAGAAGCTTGATGAGATTTTATGGTAGGTTGGATAAGGTTTCG
AGAAGAAAGAAGGGTTATGTGCTGCCTCGGTCCAAGATGGCAACCGCTGA
CTTGGCTAGGATTATAAACTCGGAAGAAGGTGCAGTCTGTTGTCAGGGCG
ATTAAAAAGGAAAGTTTAAAAGGGCTTCCCAAGAAAAAAAAATCTCCTTC
AAAAAACTTTAAAATACTCCTTTTTGAAGGTTTAAAACCCTTATATGCTA
AAAAACGGGCCCCCCCACGGAAAGGGTTTCCTTTTTTTTTGGCTGGAAAA
GGCCCACAACCCGGGGGTTATAAAAAGACCTT
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