DY257706

Overview
NameDY257706
Unique NameDY257706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1182
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.342e-31
Identity = 89/257 (34.63%), Postives = 133/257 (51.75%), Query Frame = 3
Query:  102 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKL 866
            V +L G +A +    + LP V  +  RPD++    + I++ SR  QP+     AG   SA  WG+GR VS +PR+       + + A     +GGR   P K+ +   R IN  +KR            P LV +RGH       +P V+S   ES++KT   +  L+ +G Y D E+A+ S+ +R G+GK+R RRY  RK  L+V    G + ++A RN+ GV+V  V+ L +  LAPG    R  +WT+ A  KL
Sbjct:    5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRLKN-----SSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSRKVRAGRGKLRGRRYKQRKSLLIV---TGKERLRAARNLAGVDVCLVDNLNVELLAPGTHSARLTLWTEDAVRKL 245          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.252e-30
Identity = 86/253 (33.99%), Postives = 125/253 (49.41%), Query Frame = 3
Query:  120 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDEIL 878
            D++ +    + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G      + A   M RGGR   P    +    KIN  ++             P +V ARGH      E+P+VV    ES+ KTS   + L   G + D  +AK+ + +R GKGK+R RR+   +  L+V +A+   + +A RN+PGV+ V  +RL    LAPG   GR  VW++ + + L+E L
Sbjct:    7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIVAAADNG-IGRAARNLPGVDFVTADRLNAELLAPGTHAGRLTVWSEPSLKVLEERL 251          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 6.216e-30
Identity = 80/249 (32.13%), Postives = 124/249 (49.80%), Query Frame = 3
Query:  120 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKL 866
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV        G+ A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V        VKA  NIPGV+V+    L+++ LAPGG  GR  ++TKS+ + L
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLTIYTKSSIDVL 256          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.060e-29
Identity = 86/257 (33.46%), Postives = 127/257 (49.42%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKL 866
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ GV+V     +    LAPG   GR  VWT+SA E++
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRLTVWTESAVEEV 247          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.060e-29
Identity = 86/257 (33.46%), Postives = 127/257 (49.42%), Query Frame = 3
Query:   96 VTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKL 866
            VTV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y   + AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + + +R G+G +R R+Y      L V ++E      A RN+ GV+V     +    LAPG   GR  VWT+SA E++
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKYQEPTSILFVTASESGPSTAA-RNLAGVDVATGREVNAEDLAPGAEPGRLTVWTESAVEEV 247          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.097e-26
Identity = 83/258 (32.17%), Postives = 124/258 (48.06%), Query Frame = 3
Query:   99 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDE 872
            TV+ L+GD A +    V LP V +   RPD++         N  Q     + AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  LVV S + +    A RN+ G +V   + + +  LAPG   GR  +WT+SA  ++ E
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVVTSDDQS---LAARNLAGSDVATADEVNVEDLAPGTQAGRLTLWTESALAEVAE 247          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.433e-26
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 3
Query:  144 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKL 866
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V     + L  A + +PGV+VV    L++L LAPGG  GR  ++T  A + L
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLTIYTTEALKLL 263          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.027e-24
Identity = 85/252 (33.73%), Postives = 120/252 (47.62%), Query Frame = 3
Query:  147 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRAGQGAFGNMCRG--GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDE 872
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R               N+ +   G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL+V +    +L KA  NIPG+++  V  L +  LAPG   GR ++ +K A E L E
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETLRE 263          
BLAST of DY257706 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 2.141e-22
Identity = 80/258 (31.01%), Postives = 123/258 (47.67%), Query Frame = 3
Query:   99 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGVEVVNVERLTLLKLAPGGIFGRFIVWTKSAFEKLDE 872
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y   + AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y      L V S E +    A RN+ G +V     +    LAPGG  GR  V+T+SA  ++ E
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKYRRPASILFVTSDEPS---TAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAE 245          
The following BLAST results are available for this feature:
BLAST of DY257706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METHJ7.342e-3134.6350S ribosomal protein L4P OS=Methanospirillum hung... [more]
RL4_METTP1.252e-3033.9950S ribosomal protein L4P OS=Methanosaeta thermoph... [more]
RL4_SULTO6.216e-3032.1350S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_HALSA1.060e-2933.4650S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS31.060e-2933.4650S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_NATPD1.097e-2632.1750S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_AERPE1.433e-2632.6450S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_NANEQ1.027e-2433.7350S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA2.141e-2231.0150S ribosomal protein L4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257706 ID=DY257706; Name=DY257706; organism=Citrus sinensis; type=EST; length=1182bp
CTTAACGCTGCGGCTCTGCCCCCTTCCCCATATATCCCCCAACAGAAAAA
AACACACACAAACCAAAACCAATGGCCGCCGCCGCCCGTCCTCTTGTAAC
CGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCC
CCTTGCCCGATGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTC
GTTCACTCTAACATCTCCAAGAACAGCCGCCAGCCTTACGCCGTTTCCAA
GAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCG
TCTCCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGGCCAG
GGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAA
GATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATATG
CCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCC
CGTGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGA
TTCCGCCGAGAGTGTTGAGAAAACATCAGCTGCTCTTAAAGTTCTGAAGC
AGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATT
CGCCCTGGAAAGGGTAAAATGAGAAATAGACGTTACATTTCTCGCAAGGG
CCCGCTTGTTGTGTACTCAGCCGAGGGTGCTAAGCTTGTCAAGGCTTTTA
GGAACATTCCCGGTGTTGAAGTTGTGAATGTTGAGAGATTGACCTTGTTG
AAGCTGGCGCCGGGTGGCATCTTTGGGCGGTTTATTGTTTGGACTAAATC
GGCTTTTGAGAAGCTTGATGAGATTTTATGGTAGGTTGGATAAGGTTTCG
AGAAGAAAGAAGGGTTATGTGCTGCCTCGGTCCAAGATGGCAACCGCTGA
CTTGGCTAGGATTATAAACTCGGAAGAAGGTGCAGTCTGTTGTCAGGGCG
ATTAAAAAGGAAAGTTTAAAAGGGCTTCCCAAGAAAAAAAAATCTCCTTC
AAAAAACTTTAAAATACTCCTTTTTGAAGGTTTAAAACCCTTATATGCTA
AAAAACGGGCCCCCCCACGGAAAGGGTTTCCTTTTTTTTTGGCTGGAAAA
GGCCCACAACCCGGGGGTTATAAAAAGACCTT
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