EY702524

Overview
NameEY702524
Unique NameEY702524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   74 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVG 640
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D   P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E   +    +++ G +V    G++ GR+G
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIG 189          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-17
Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 2
Query:   89 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            KRL  P+   + +    + P P  G HK+   + L+ ++R+ L+ +   RE   IL    V VDGKV  +  +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L + KIT+ IK   GN   +T G + G  G I
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTI 189          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 2
Query:   89 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQN 652
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  +     GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +T G + G +  I++
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKS 191          
The following BLAST results are available for this feature:
BLAST of EY702524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALLT3.160e-1728.4230S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_THEVO9.193e-1730.1130S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_PICTO7.783e-1628.7230S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702524 ID=EY702524; Name=EY702524; organism=Citrus sinensis; type=EST; length=904bp
TTGCCGACCCACGCGTCCGGACAAGCAGCCTCAGCGAGGCAGCAGCTTCA
AACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAAT
GCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAA
GCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTG
TATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCT
ATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAC
GACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACG
AGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCC
CTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCA
GTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCA
TCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGAC
TTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATAT
TGTCATGGTCACCTGGGGGAGAAACAGAGGTCGAGTTGGAATCATCCAGA
ACAGGGGAAAGCATAAGGGAAGGTTTGAGAACATCCATATTCCAGATGCC
CTGGGTCATGAGTTTGCAACTCGTCTAGGCGATGGGTTCCCCATCCGGAA
GGGTTCAAAACCTGGGGTGGCACTTCCTAAGGCGAGGGTATTTAGGTGTC
CATCCATGAGAGACTAAGGAAAAAAAGGCTGCCCAGGCTCCTGCTAAGCT
TTTACATGAAATTGGATGCCTCTGCTGGCTTTGTTTTCCTGGTAGAATAA
AGCC
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