EY702524

Overview
NameEY702524
Unique NameEY702524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 156/245 (63.67%), Postives = 190/245 (77.55%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKARVFR 796
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV  G N GRVG+I NR +H G F+ +H+ DA G+ FATRL + F I  G+KP ++LP+ +  R
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIR 245          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 156/245 (63.67%), Postives = 190/245 (77.55%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKARVFR 796
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV  G N GRVG+I NR +H G F+ +H+ DA G+ FATRL + F I  G+KP ++LP+ +  R
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIR 245          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 156/245 (63.67%), Postives = 190/245 (77.55%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKARVFR 796
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV  G N GRVG+I NR +H G F+ +H+ DA G+ FATRL + F I  G+KP ++LP+ +  R
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIR 245          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 160/242 (66.12%), Postives = 188/242 (77.69%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKAR 787
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD+T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVT GRN GRVG I +R  H G FE IH+ DAL  EFATRL + F I +  K  ++LPK +
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGK 242          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 160/242 (66.12%), Postives = 188/242 (77.69%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKAR 787
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD+T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVT GRN GRVG I +R  H G FE IH+ DAL  EFATRL + F I +  K  ++LPK +
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGK 242          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 325.865 bits (834), Expect = 2.006e-88
Identity = 155/242 (64.05%), Postives = 191/242 (78.93%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKAR 787
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+T GRN GRVG + NR +H G F+ +HI D+ GH FATRL + F I KG+KP ++LPK +
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGK 242          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.620e-88
Identity = 158/242 (65.29%), Postives = 192/242 (79.34%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKAR 787
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VDGKVRTD+T+PAGFMDV+ + KT ENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL   KIT F+KF+ GNIVM T GRN GRVG I +R +H+G F+ +HI DAL ++F TRL + F I +G+K  ++LPK +
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGK 242          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 325.479 bits (833), Expect = 2.620e-88
Identity = 155/245 (63.27%), Postives = 189/245 (77.14%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKARVFR 796
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG++ NR +H G  + +H+ DA G+ FATR+ + F I  G+KP ++LP+ +  R
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIR 245          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 2.620e-88
Identity = 155/245 (63.27%), Postives = 190/245 (77.55%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKARVFR 796
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KI +FIKFD GN+ MV  G N GRVG+I NR +H G F+ +H+ DA G+ FATR+ + F I  G+KP ++LP+ +  R
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIR 245          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.421e-88
Identity = 156/242 (64.46%), Postives = 190/242 (78.51%), Query Frame = 2
Query:   62 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALPKAR 787
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VDGKVRTD+ YP GFMDVV+I KT E FRL+YD KGRF +H + +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++  NKI D IKFD GN+ M+T GRN GRVG + +R +H G F+  HI D+ GH FATR+ + F I KGSK  V+LP+ +
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGK 242          
The following BLAST results are available for this feature:
BLAST of EY702524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4Y1_PANTR1.536e-8863.6740S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA1.536e-8863.6740S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN1.536e-8863.6740S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4C_SCHPO1.536e-8866.1240S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.536e-8866.1240S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_DROME2.006e-8864.0540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_YARLI2.620e-8865.2940S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4Y2_PANTR2.620e-8863.2740S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_GORGO2.620e-8863.2740S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_LYSTE3.421e-8864.4640S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702524 ID=EY702524; Name=EY702524; organism=Citrus sinensis; type=EST; length=904bp
TTGCCGACCCACGCGTCCGGACAAGCAGCCTCAGCGAGGCAGCAGCTTCA
AACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAAT
GCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAA
GCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTG
TATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCT
ATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAC
GACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACG
AGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCC
CTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCA
GTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCA
TCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGAC
TTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATAT
TGTCATGGTCACCTGGGGGAGAAACAGAGGTCGAGTTGGAATCATCCAGA
ACAGGGGAAAGCATAAGGGAAGGTTTGAGAACATCCATATTCCAGATGCC
CTGGGTCATGAGTTTGCAACTCGTCTAGGCGATGGGTTCCCCATCCGGAA
GGGTTCAAAACCTGGGGTGGCACTTCCTAAGGCGAGGGTATTTAGGTGTC
CATCCATGAGAGACTAAGGAAAAAAAGGCTGCCCAGGCTCCTGCTAAGCT
TTTACATGAAATTGGATGCCTCTGCTGGCTTTGTTTTCCTGGTAGAATAA
AGCC
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