EY702524

Overview
NameEY702524
Unique NameEY702524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.251e-30
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 2
Query:   71 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRG 658
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+L++R+ LK A T RE   I+  + +LVDGK R D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L    + D ++FD G+ V+VT GR  GR+G ++  G
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRVEGIG 200          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 83/242 (34.30%), Postives = 132/242 (54.55%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVG-IIQNRGKHKGRFENIHIPDALGHEFATRLGDGFPIRKGSKPGVALP 778
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + + E +I + + F+ G  V VT G+N  R G I++ +    G  + + I D  G  F T     F +    KP ++LP
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.138e-29
Identity = 73/207 (35.27%), Postives = 116/207 (56.04%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRG---RVGIIQNR 655
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VT G++ G   ++  ++NR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENR 208          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.047e-28
Identity = 71/226 (31.42%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFAT 721
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +T G++ G    +    K     + + + +  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKT 227          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.047e-28
Identity = 71/226 (31.42%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFAT 721
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +T G++ G    +    K     + + + +  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKT 227          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.786e-28
Identity = 72/207 (34.78%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRG---RVGIIQNR 655
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VT G++ G   ++  ++NR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENR 208          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 69/192 (35.94%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   71 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            G +KHLK   APK W +      +  KPS+G H     L L LV+R+ LK A   RE   I+   +VLVDG+V  D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N +DG+ +   +      D I L + +++I +  +   G  V++T G++ G +G +
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 71/207 (34.30%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRG---RVGIIQNR 655
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +T G++ G   ++  ++NR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENR 208          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 89/253 (35.18%), Postives = 134/253 (52.96%), Query Frame = 2
Query:   62 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFEN-IHIPDALGHEFATRLGDGFPIRKGSKPGVALPK 781
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VDG+VR D  +P G MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + + E +I D++ F+ G I +V  GRN GRVG I+   K  GR +  + + D     F T     FPI K  +P + LP+
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPE 251          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 2
Query:   74 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQN 652
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVDG VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L + E ++ D +KF+ G +VM+T G + G +G I++
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKS 190          
The following BLAST results are available for this feature:
BLAST of EY702524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_KORCO7.251e-3036.2230S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_PYRFU1.237e-2934.3030S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METM56.138e-2935.2730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS1.047e-2831.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.047e-2831.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METM71.786e-2834.7830S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METS32.332e-2835.9430S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METM62.332e-2834.3030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_IGNH42.332e-2835.1830S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_ARCFU3.979e-2836.2730S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702524 ID=EY702524; Name=EY702524; organism=Citrus sinensis; type=EST; length=904bp
TTGCCGACCCACGCGTCCGGACAAGCAGCCTCAGCGAGGCAGCAGCTTCA
AACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAAT
GCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAA
GCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTG
TATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCT
ATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAC
GACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACG
AGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCC
CTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCA
GTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCA
TCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGAC
TTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATAT
TGTCATGGTCACCTGGGGGAGAAACAGAGGTCGAGTTGGAATCATCCAGA
ACAGGGGAAAGCATAAGGGAAGGTTTGAGAACATCCATATTCCAGATGCC
CTGGGTCATGAGTTTGCAACTCGTCTAGGCGATGGGTTCCCCATCCGGAA
GGGTTCAAAACCTGGGGTGGCACTTCCTAAGGCGAGGGTATTTAGGTGTC
CATCCATGAGAGACTAAGGAAAAAAAGGCTGCCCAGGCTCCTGCTAAGCT
TTTACATGAAATTGGATGCCTCTGCTGGCTTTGTTTTCCTGGTAGAATAA
AGCC
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