EY702524

Overview
NameEY702524
Unique NameEY702524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.512e-27
Identity = 69/207 (33.33%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   68 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRG---RVGIIQNR 655
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +T G++ G   ++  ++NR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENR 208          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.975e-27
Identity = 77/236 (32.63%), Postives = 125/236 (52.97%), Query Frame = 2
Query:   71 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEEN------KITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFEN-IHIPDALGHEFATRLG 730
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G  V    GR+ G VG +      +G  E+ I + +  G +F T  G
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKG 242          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 68/189 (35.98%), Postives = 104/189 (55.03%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ 649
            HLKR+ AP+ W + +    +  KP  G H     +PL++VLR+ LK A    E+  IL +  VLVDGKVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L + E KI     + VG++VMVT G++ G +G ++
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVK 190          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.083e-25
Identity = 66/188 (35.11%), Postives = 98/188 (52.13%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            H KRL+ PK W + K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  DG  I   +      D++ L + + ++   +KF+VGN+ MV  G++ G  G I
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 65/188 (34.57%), Postives = 97/188 (51.60%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            H KRL+ PK W + + G  +      GPH     LPL L++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I   +      D++ L + +  +   +KF+VGN+ MV  G++ G  G I
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKI 188          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.043e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVG 640
            HL+R  AP  W +  K+GG +  + S GPH     LPL +++R+ LKYA T RE   I+ + +V +DG +R D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.043e-24
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            H KRL+ P+ W   K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I   +      D++ L L + +I   ++F VGN+ MV  G++ G +G I
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKI 188          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.043e-24
Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDALGHEFATRL 727
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE+ K+ D+        V+   G N GR G + N  +   + + I    A   EF T L
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVL 220          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 73/190 (38.42%), Postives = 98/190 (51.58%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVG 640
            HL+R  AP  W +  K GG +  KPS GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G + +VT G N G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.945e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVG 640
            HL++  AP  W +  K GG +A +PS+GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
The following BLAST results are available for this feature:
BLAST of EY702524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METMP1.512e-2733.3330S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METKA1.975e-2732.6330S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_UNCMA1.280e-2635.9830S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_METAC1.083e-2535.1130S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_METMA1.565e-2434.5730S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_PYRIL2.043e-2436.3230S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_METBF2.043e-2434.5730S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_CALMQ2.043e-2431.6530S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_PYRAR4.552e-2438.4230S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PYRCJ5.945e-2436.3230S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702524 ID=EY702524; Name=EY702524; organism=Citrus sinensis; type=EST; length=904bp
TTGCCGACCCACGCGTCCGGACAAGCAGCCTCAGCGAGGCAGCAGCTTCA
AACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAAT
GCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAA
GCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTG
TATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCT
ATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAC
GACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACG
AGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCC
CTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCA
GTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCA
TCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGAC
TTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATAT
TGTCATGGTCACCTGGGGGAGAAACAGAGGTCGAGTTGGAATCATCCAGA
ACAGGGGAAAGCATAAGGGAAGGTTTGAGAACATCCATATTCCAGATGCC
CTGGGTCATGAGTTTGCAACTCGTCTAGGCGATGGGTTCCCCATCCGGAA
GGGTTCAAAACCTGGGGTGGCACTTCCTAAGGCGAGGGTATTTAGGTGTC
CATCCATGAGAGACTAAGGAAAAAAAGGCTGCCCAGGCTCCTGCTAAGCT
TTTACATGAAATTGGATGCCTCTGCTGGCTTTGTTTTCCTGGTAGAATAA
AGCC
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