EY702524

Overview
NameEY702524
Unique NameEY702524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.730e-23
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRG 631
            HL+R  +P  W +  K GG +A +PS GPH     +PL LV+R+ L+YA T RE   I+ + ++ VDG VR +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.854e-23
Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQN 652
            H+ R  AP   M+ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR+L D     R   +  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L   +I D       +  +   GRN G  GI++N
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKN 195          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGIIQ--NRGKHKGR-FENIHIPDALGHEFATRL 727
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +   G+N G  G+++  N  K K R +  I +    G+ + T L
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNL 223          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.492e-22
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTWGRNRGRVGII 646
            HL+R  AP  W +  K GG +  +PS GPH     LPL L++R+ LKYA T  E   I+ + +V VDG VR D  +P G MDV+ I  T E +R++ D    + L  +  EEA  KL +V      + G   ++ +DGR   T       IK  D++  DL    I   I   +G   +V  G N G  G +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
BLAST of EY702524 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.762e-21
Identity = 64/210 (30.48%), Postives = 109/210 (51.90%), Query Frame = 2
Query:   83 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDTTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTWGRNRGRVGIIQNRGKHKGRFENIHIPDAL 703
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M+  G++ G VG I          E+I +P +L
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRI---------IEHIPVPGSL 202          
The following BLAST results are available for this feature:
BLAST of EY702524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_THENV1.730e-2335.2930S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_SULSO3.854e-2334.2030S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULIY6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA6.573e-2331.6730S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_PYRAE9.492e-2235.4230S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_METHJ2.762e-2130.4830S ribosomal protein S4e OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702524 ID=EY702524; Name=EY702524; organism=Citrus sinensis; type=EST; length=904bp
TTGCCGACCCACGCGTCCGGACAAGCAGCCTCAGCGAGGCAGCAGCTTCA
AACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAAT
GCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAA
GCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTG
TATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCT
ATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAC
GACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACG
AGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCC
CTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCA
GTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCA
TCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGAC
TTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATAT
TGTCATGGTCACCTGGGGGAGAAACAGAGGTCGAGTTGGAATCATCCAGA
ACAGGGGAAAGCATAAGGGAAGGTTTGAGAACATCCATATTCCAGATGCC
CTGGGTCATGAGTTTGCAACTCGTCTAGGCGATGGGTTCCCCATCCGGAA
GGGTTCAAAACCTGGGGTGGCACTTCCTAAGGCGAGGGTATTTAGGTGTC
CATCCATGAGAGACTAAGGAAAAAAAGGCTGCCCAGGCTCCTGCTAAGCT
TTTACATGAAATTGGATGCCTCTGCTGGCTTTGTTTTCCTGGTAGAATAA
AGCC
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