DY257681

Overview
NameDY257681
Unique NameDY257681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1245
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
[Close]
BLAST of DY257681 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 33/76 (43.42%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   19 NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 231
            NKE++     ++D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   77 NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
The following BLAST results are available for this feature:
BLAST of DY257681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SKP1_CAVPO9.047e-1143.42S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN9.047e-1143.42S-phase kinase-associated protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DD11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257681 ID=DY257681; Name=DY257681; organism=Citrus sinensis; type=EST; length=1245bp
CAAGTACCAGGCCGCTCAAATAAGGAACGTAAAATGTTTGATGAGAAGTT
TATCCGTATGGATACTAAAAAGTTGTGTGAGCTTACTTCTGCTGCTGACA
GCCTCCAATTAAAGCCTTTGGTGGATCTCACTAGTCGTGCGCTTGCTCGA
ATTATTGAAGGAAAAACTCCTGAGGAAATACGCGAGACATTTCATTTACC
AGATGATCTCACGGAGGAAGAGAAGTTGGAACCCTTAAATAATGTAACTG
ATGATCCGCGTATTCGGCTTTTGAATCGATTATATGCGAGGAAGAGGAAA
GAGTTAAAAGAGAGGGAGAAACTTAAGAATGTTGAGGTCGAGGAGGAGCA
TGTGGATGAGCGCTCAGTTGATGATCTATTGTCATTTATAAATGGGGGGA
ATGGAGATTCAAAGGGGATTAAAACAAACAAGAACAAAAAGAAAAACCGA
AGAAGAAAAGATCAACTAAAGGACTCTTCTACAAACAATTTAAATGGAAA
CCACAAGGAGTTCAACTCTCTCCATTCAGCTTTCCATAATGGCGGGCTTA
ATGATATTGCGGTGTCCACTCCCCATAAGACTTCAAAATTGCAATGTTCT
ACTGCTGTTACCTGTTCACCAAAGATGGAATTTGATGATGGTGAAATTGA
TGATGATCTAGATCCTGCGATGAAGGAGGAGCTTGACAGGGAAGTAGAGG
ACTTTGCTCGGCGATTGAATTCAGATTGGCCTCAAAGGATGCAAGAGATT
TTATCATTGGGTCAAGATAGGAGACTTGTACAAGTATCAATGAACAGCAA
CTGTTCCAGTCGTAGATGTACAAGTTTGGACAGTAGATAACGCAATCAAA
GATCAATAATTTATATGGCAGAATTGTCGGCTACTTTTAATGCTTCAAGC
ACGTGGCAGCACTGACTTTGCTGCTGAAAAATGTTAGTTACTTGTGAAGT
TATTTGTTTCTTTTTTCCCCCTCCAAAATGTTAATTTTCCGTTTTGAGCA
TCCTTGGAACTTCCAAAAAAAAATTGGGCAAAAAAAAAAAAAAAAAAAAA
AAACCCCAACTTTCCTTGGTACCAAAGTTGGGGAATTTATAAAAAAAAGA
CATTTTGCTTTTATCAATTTTGTTTGCCACCCAAAAAAAGGGGTCCCCAT
TATCCCCAAACAAAAAAAAAAAAATACCTTTTTTTTTTTTTTTCCCCCCC
CCCCCCCCGCCCCCTGAAAAAATTTCCCCCCCCCTCCCATAAATG
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