DY257652

Overview
NameDY257652
Unique NameDY257652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1108
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.093e-28
Identity = 93/260 (35.77%), Postives = 127/260 (48.85%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG-----LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 767
            + HLAA  GVR +  N  H Y   NI  L  LLEAC+  + Q + V+AS+SSVYG     ++EN   S       P S Y  TK  GE++ H Y   +G+ I  LRFFTVYGP  RPDMA+    +  LQ KP+T++        +RDFTYI D VKG    L                      N+G     +V K+V+++E    +  +K  +       G+   T A+IS A++   Y P T L+ GL   +  YLS
Sbjct:   78 IFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQ-TFVFASTSSVYGEKQGKVSENTSLS-------PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIFGDGQQ---SRDFTYISDCVKGITAVLGKPHLIG------------ETVNIGGAERASVLKVVSLIE---DISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGLTNEIA-YLS 310          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.532e-18
Identity = 67/253 (26.48%), Postives = 112/253 (44.27%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYG----PWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 758
            V+H AAQ  VR +++NP      N+ G + +LE  +  +    +  +S  +VYG    +P  E +    P S Y  +K  GEE    YN +YG+    LR+  VYG    P G   +      + +    PI    G       RDF Y+ D+ K  L +L+                   I N+G     +V +L +I++  +  + +  + + P  G+V   + +I  A+   G++P  DL+ G+K+ V W
Sbjct:   68 VIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDE-NHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQ----TRDFVYVGDVAKANLMALNWKN---------------EIVNIGTGKETSVNELFDIIKHEIGFRGEA-IYDKPREGEVYRIYLDIKKAE-SLGWKPEIDLKEGIKRVVNW 298          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.242e-17
Identity = 75/255 (29.41%), Postives = 112/255 (43.92%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG-----KNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 761
            V HLAAQA V  A +NP S   +NI G   +LEAC+       ++ ASS   YG  EN+P+ E +   Q    Y  +K   + I+HTY H YGL +   R   +YG          +F R I Q   + V  G     ++     RD+ YI+D V+  L                 G A    FN  N   +TV +LV  + + +    K  V+   G+ ++   + +   A+K   + P   +  GL+K + WY
Sbjct:   80 VFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDE-NMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGG------GDLNFNRIIPQTIQL-VLNGEAPEIRSDGTFVRDYFYIEDAVQAYL-----LLAEKMEENNLAGEA----FNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQ-GSNEIKHQYLSAEKARKLLNWTPAYTIDEGLEKTIEWY 316          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: VIPB_SALTI (Vi polysaccharide biosynthesis protein vipB/tviC OS=Salmonella typhi GN=vipB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.529e-17
Identity = 67/261 (25.67%), Postives = 127/261 (48.66%), Query Frame = 3
Query:    9 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-----GNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 764
            +V+H AA   V  ++++P +   +NI G + +L A + A+   S  +A+SSS YG + ++P  E +R  +P S YA TK   E  A  +   Y  +  GLR+F V+G    P+ AY +    +  ++L+ +PI +         +RDF YI+++++  L S                 +  +++N+      ++ +L  ++   L +   +     P      +GDV  + A+I+  +    Y P  D++ GLK+ ++WY+
Sbjct:   93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYI---NGDGSTSRDFCYIENVIQANLLSATTNDL----------ASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.844e-13
Identity = 68/251 (27.09%), Postives = 119/251 (47.41%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVN-ILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 761
            V+HLAA++ V  ++ +   +V +N+ G  TLL+A  + +   S V  S+  VYG  E+  ++E D   +P S Y+A+K +G+ +A  ++  +GL +   R    YGP   P+     F   ++ G  + +Y    +V   R++ ++DD V+G                  RG A  R++N+G  + ++  +LV  +LE           +E     D  +   + +  Q+E G+ P  DL  GL   V WY
Sbjct:   79 VVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAA-TRHGVASFVQVSTDEVYGSLEHGSWTE-DEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLNV---REWLHVDDHVRG------------IEAVRTRGRAG-RVYNIGGGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYA-VDSTRIQRELGFAPAVDLADGLAATVAWY 310          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.326e-13
Identity = 71/256 (27.73%), Postives = 122/256 (47.66%), Query Frame = 3
Query:    3 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI-LQGKPITVYRGKNHV----------DLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT-TDLQT 734
            F  V+H AA++ V  +++ P+ Y H N+   +TLL+A + A+   ++V++S+++ YG  + VP +E D   QP + Y ATK + +    +Y   +GL+ T LR+F V G +G         T  I L  +  T +R K  +             RD+ +I D+ K  + +L+                 +RIFNLG+    +V ++V +  R +        +     GD     A+   A++E G+ P  TDL+T
Sbjct:   65 FEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMR-AHGVNNLVFSSTAATYGEPDVVPITE-DMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGAYGNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTPDGTAVRDYIHILDLAKAHVLALE-----------SNEAGKHRIFNLGSGDGYSVKQVVEMC-REVTGHPIPAEVAPRRAGDPATLIASSEKAKQELGWTPEHTDLRT 306          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.079e-12
Identity = 63/256 (24.61%), Postives = 104/256 (40.62%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE---NVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANI---SSAQKEFGYRPTTDLQTGLKKFVRWY 761
            +MH AAQ  V  +  N   +  +NI G   LLEACK        +  S+  VYG  +   +V   EA +   P + Y+ATK   E +   Y   YGL +   R   VYGP   P+     F    + GKP+ ++   ++V   R + Y +D+ +                   +G   + ++N+G T    V  + N + +   +     +  +      PF            K+ G+   T+ + GL+K + WY
Sbjct:   84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQL-LPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNV---RSYLYCEDVAEA------------FEVVLHKGEVNH-VYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENR---PFNDQRYFLDDQKLKKLGWCERTNWEEGLRKTMEWY 319          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.409e-12
Identity = 70/260 (26.92%), Postives = 114/260 (43.85%), Query Frame = 3
Query:    3 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL---------------ARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRP-TTDLQT 734
            F  V+H AA++ V  +++ P  Y   N+   + LL+A K  N + +IV++S+++ YG  E VP +E D    P + Y ATK + +    +Y H YG + T LR+F V G +G         T  I    P+ +     H D                 RD+ +I D+    + +L                  +RIFNLG+    +V ++++   R +        +     GD     A+ + AQ E G++P  TDL T
Sbjct:   65 FDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVR-NIVFSSTAATYGEPETVPITE-DAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYFNVAGAYGLVGENREIETHLI----PLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQSNV-----------EGSHRIFNLGSGEGYSVKQVIDTC-REVTGHLIPAEVAPRRAGDPAVLIASSAKAQSELGWKPQRTDLHT 306          
BLAST of DY257652 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.193e-11
Identity = 61/255 (23.92%), Postives = 102/255 (40.00%), Query Frame = 3
Query:   12 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ--PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANI---SSAQKEFGYRPTTDLQTGLKKFVRWY 761
            +MH AAQ  V  +  N   +  +NI G   LLEACK        +  S+  VYG  +           Q  P + Y+ATK   E +   Y   YGL +   R   VYGP   P+     F    + GKP+ ++   ++V   R + Y +D+ +                   +G   + ++N+G        +++++     K+  K     +    + PF            K+ G++  T+ + GLKK + WY
Sbjct:   86 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNV---RSYLYCEDVAEA------------FEVVLHKGEIGH-VYNVGTKRE---RRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLGWQERTNWEDGLKKTMDWY 321          
The following BLAST results are available for this feature:
BLAST of DY257652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YTCB_BACSU9.093e-2835.77Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
GALE_METJA6.532e-1826.48Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
YFNG_BACSU3.242e-1729.41Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
VIPB_SALTI5.529e-1725.67Vi polysaccharide biosynthesis protein vipB/tviC O... [more]
STRE_STRGR4.844e-1327.09dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
GALE_CORGL6.326e-1327.73UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
RHM3_ARATH1.079e-1224.61Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
GALE_CORDI1.409e-1226.92UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
RHM2_ARATH1.193e-1123.92Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CH06FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257652 ID=DY257652; Name=DY257652; organism=Citrus sinensis; type=EST; length=1108bp
CTTTTACGCACGTGATGCATTTAGCGGCTCAAGCCGGTGTTAGATACGCG
ATGCAGAATCCCCACTCGTACGTGCACAGCAATATCGCTGGCCTCGTCAC
GCTCCTTGAGGCTTGCAAATCAGCCAATCCTCAGCCGTCGATTGTGTGGG
CCTCGTCGAGCTCAGTCTACGGCTTAAACGAGAACGTCCCATTCTCCGAG
GCTGATCGGACGGACCAGCCAGCTAGTCTTTACGCGGCTACCAAAAAGGC
CGGTGAAGAAATTGCTCACACCTACAATCACATTTACGGCCTCTCAATTA
CCGGGCTGAGGTTTTTCACCGTGTACGGACCCTGGGGCCGACCCGATATG
GCTTACTTCTCGTTCACGAGAAATATTCTCCAAGGCAAACCAATCACGGT
TTATCGTGGGAAGAATCACGTCGACTTGGCACGAGATTTTACTTACATTG
ACGATATCGTGAAGGGTTGTTTAGGTTCGCTGGATACCTCGGGTAAGAGT
ACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTAA
TTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTGG
AGAGACACCTGAAGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGGA
AACGGCGACGTCCCGTTCACGCATGCGAATATCAGTTCGGCCCAGAAGGA
GTTCGGGTACAGGCCCACGACGGATTTGCAAACCGGCTTGAAAAAATTTG
TTAGATGGTATCTCTCATATTACGGCTANTATCGTGGCNAACGTGTAAAT
TAATTTTTTTTTCTTTTATGTTTTTTGCGTTTTACCTTCTTTTTTTCTTT
TTTTTTTTGGGTTTTCGCGCCGTGGGAGGTGCGGGATTAAAAGGTTTTTT
TTTTTTTGGTTTTTTTCCTTAAAAAAAACCAAAGGAACAAAAAAACGTTG
TTAGGGGGAAAAAAAAAAAAAAGAAAAAAAGTGAACCAAATTATTCTTTT
TCTTTGGGGGAAAGGGAAAAAAGGGGGGTTCCACCTCCCTCCCCCCGGAA
ATTTTTCTTTTGTTTTTGGTTTTTCTTCCCCTTTTTGTTTCCCCTTTCCC
TTTTTGGG
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