DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 59/155 (38.06%), Postives = 95/155 (61.29%), Query Frame = 3
Query:   87 MASGNLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 539
            M+S NLP    +R+VKE + L S    GI+  P E+++     ++ GP+ +PYEGG FK  L L  D+P S PK  F+TKI+HPN+ K G IC++ LK  W+  L ++ +LL+I+ LL  PN +  L+++ ++    +  +  + AK +T ++AS
Sbjct:    1 MSSENLPPDVIKRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHAS 155          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 52/137 (37.96%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP+ +P+E G FKL L   E YP   P V+F++ ++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN   P +   A+  + ++ E V   ++
Sbjct:    7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRK 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 3
Query:   93 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADE 491
            S ++ +R+  E   L+    PGISA P EDN+  +   I G   + +EG  ++L L    DYP  +PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL++  A+ W   E
Sbjct:   34 SHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQE 166          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 3
Query:   90 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 482
            A G + +R+ +E   L+     GISA P  DN+  +   I G + + YE   +KL L  P  YP +AP V+FLT  YHPN+D  G ICLDILK+KWS    +RT+LLSIQ+LL  PN D PL+ + A+ WK
Sbjct:   27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   99 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 479
            ++ +R+  E   L+  P+PGISA P  DN+  +   I G   + YE   FK+ L  P DYP   P V+F T+ +HPN+D  G ICLDILKDKWSP   +R++L+SIQ+LL  PN + PL+   A  W
Sbjct:    6 SVSKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW 132          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   93 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADE 491
            S ++ +R+  E   L+    PGISA P EDN+  +   I G   + +EG  ++L L    DYP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W   E
Sbjct:   33 SQSVLKRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   72 SLGIPMASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            S G+ +   ++ +R+  E   L+    PGISA P  D N+ ++   I GPS + YEG  FK+ +  P +YP S P + F + ++HPN+D  G ICLDILKDKWS    ++T+LLS+Q+LL  PN   PL+   A+ W  D  E
Sbjct:   19 SAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIE 161          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 50/137 (36.50%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            RR++++ +R+  +   G+SASP  DN+  +N +I+GP+ +P+E G F+L L   E YP   P V+F+++++HPN+   G +CLDIL+++WSP   + ++L SIQ+LL+ PN   P +   A  +K   ++ ++  +E
Sbjct:    7 RRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 50/137 (36.50%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP+ +P+E G F+L +   E YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN     +   +  +K +  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   90 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            AS +  RR+ KE   L   P P I  +  +DN+ ++    LGPS S Y GG F   L  P DYP   P + F T+IYHPN D  G +CL ILK + + P++++R+VL  I  LL  PNPDDPL  +IA+ ++ D     + A+++   +A
Sbjct:    4 ASPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBE2S_DICDI1.303e-2638.06Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC2_SCHPO1.701e-2637.96Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC19_ARATH1.701e-2644.36Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_HUMAN2.222e-2646.56Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_DICDI3.790e-2644.88Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC20_ARATH3.790e-2644.36Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC11_SCHPO3.790e-2641.26Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC2_DEBHA4.950e-2636.50Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_NEUCR8.443e-2636.50Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC14_SCHPO8.443e-2640.00Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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