DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 47/154 (30.52%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTR 527
            RR++KE + L      GI+A P+ ED+   ++ +I GP  +P+EGG++   L  P DYP+  P ++F  + +HPN+ K G +C+ IL              ++WSP   +  +LLS+ ++L+ PN +   + +  K W+ D  E     +   R
Sbjct:    8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLAR 161          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  147 PAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            P  G SA   +DN  Y + V+++GP  + YEGG FK  L  P DYP   PK++F+++I+HPNIDK G +C+ IL D             +W P   + T+LLS+ ++L+ PN + P + + AK  + +  E
Sbjct:   19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAE 149          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  207 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 533
            ++ P   PY+ G F++E+  P +YP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  D  +  + A+E+T+ Y
Sbjct:   38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  207 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 533
            ++ P   PY+ G F++E+  P +YP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  D  +  + A+E+T+ Y
Sbjct:   38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  207 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 533
            ++ P   PY+ G F++E+  P +YP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  D  +  + A+E+T+ Y
Sbjct:   38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  207 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 533
            ++ P   PY+ G F++E+  P +YP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  D  +  + A+E+T+ Y
Sbjct:   38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 47/133 (35.34%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 482
            R ++ E + L   P+     S  E+NM  ++V++ GP+ + YEGG+FK ++  P +YP   P++ F ++++HPNI   GR+C+ IL           WSP  +I T+LLS+ +LL+ PN D P + + AK ++
Sbjct:    4 RFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 54/154 (35.06%), Postives = 90/154 (58.44%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            M S N+ RRI  E  ++ ++    A     +  ++N+  + V I GP  S YE   F+LE+ L  DYP S+PKV+F+T I H N++  G ICL+IL KD W+ +L I +++ SI  LL  PNP+DP +  +A  ++ D+    +  +++ + ++
Sbjct:    1 MNSSNI-RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 52/160 (32.50%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   90 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTR 527
            AS  L R+ +KE Q+    P  G S    +D   + + VMI+GP  + YEGG F   L  P+DYP+  PK++F T+I+HPN+   G +C+ IL              ++W P     T+L+S+ ++LS+PN + P + + AK ++ +  E  +  +   R
Sbjct:    5 ASEQLLRKQLKEIQK---NPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVR 161          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 47/151 (31.13%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            MA+      + K+ + L  +P  G SA   ++ N+  ++V I+GP  + YEGG F   +  PE+YP+S P V F ++++HPN+   G++C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+ +  E
Sbjct:    1 MANNQASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAE 151          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC7_SCHPO9.042e-2030.52Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC7_CAEEL9.042e-2037.40Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2L3_PONAB9.042e-2037.27Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE9.042e-2037.27Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN9.042e-2037.27Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN9.042e-2037.27Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC_ASFP41.181e-1935.34Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC1_MIMIV1.542e-1935.06Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC15_SCHPO2.014e-1932.50Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC14_ARATH4.487e-1931.13Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
back to top