DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 49/137 (35.77%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  159 ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT----------------------KIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 500
            +   P ED +  ++ +I GP QSP+E  ++KLE+ +P +YP+  PK++F+                       K+ HPN++ K G ICLDIL+ KWSPA  +++ L++I  LL+ P P  PL+ ++A   K D+T A
Sbjct:   32 VDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTA 168          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  180 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            D+++ F V   GP+ S Y+GGV+K+++ LPE YP  +P V F+ KIYHPN+D+  G +CLD++   WSP   +  V  S +  LL  PNP DP +   A     D        KE+   YA
Sbjct:   27 DDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIA 470
            RRI  +  +LL         +   DNM+ F V   GPS++PY GG++K+ + LP +YP  +P + F+ +I+HPNID+L G +CLD++   WSP   +  +  + +  LL  PN  DPL+   A
Sbjct:    6 RRIETDVMKLLMSD---YEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAA 125          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 47/140 (33.57%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  120 KETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            K+ + L   P  G SA   ++ N+  ++V I+GP  + YEGG F   +  P++YP S P VRF + I+HPN+   GR+C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+    E
Sbjct:   11 KQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDE 150          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  120 KETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            K+ + L   P  G SA   ++ N+  ++V I+GP  + YEGG F   +  P++YP S P VRF + ++HPN+   GR+C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+    E
Sbjct:   11 KQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDE 150          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  195 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            F V   GP  +PYEGGV+K+ + LP+ YP  +P + F+ KI+HPNID+  G +CLD++   W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA++
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  195 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            F V   GP  +PYEGGV+K+ + LP+ YP  +P + F+ KI+HPNID+  G +CLD++   W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA++
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  195 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            F V   GP  +PYEGGV+K+ + LP+ YP  +P + F+ KI+HPNID+  G +CLD++   W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA++
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  180 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            D M  F V   GP  S Y+GGV+K+ + L E YP  +P + F  KIYHPN+D++ G +CLD++   WSP   +  +  + +  LL  PNP DPL+   A     D+       KE+   YA
Sbjct:   27 DGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA---KHWK 482
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P DYP S P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBCX_PICAN7.654e-1935.77Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC6_ARATH9.997e-1939.67Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC8_SCHPO1.306e-1837.40Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC13_ARATH2.227e-1833.57Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_ARATH2.909e-1832.86Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBE2H_MOUSE4.961e-1837.29Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN4.961e-1837.29Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN4.961e-1837.29Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC4_WHEAT4.961e-1838.02Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UB2R1_MOUSE4.961e-1835.21Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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