DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA---KHWK 482
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P DYP S P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 452
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P DYP S P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 452
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P DYP S P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 452
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P DYP S P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  138 LSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 515
            LS P+   +  P+ +++  F + +  P +  Y+GG F+   ++  ++P   PKV+ L K+YHPNID  G +CL+IL++ W P L +  V++ +Q L   PN  DPL+ + A    A+  E     K
Sbjct:   36 LSLPSTMKTHFPSAEDIMNFELTVR-PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  216 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            P +  Y+GG FK  + + ++YP   PKV+ L KIYHPNID  G +CL+IL+  W+P L + ++L+ +Q L  +PN +DPL+   A
Sbjct:   60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            R+ K+ + L   P   ++    +++      +I+ P +  Y+GG F+      E YP+  PKV    KI+HPNID  G+ICL+IL++ WSPAL ++ ++L + +L   PN +DPL+   A+    D+ E
Sbjct:   36 RLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLE 164          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   93 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVM-----ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            SG    R+ +E +    +   G+ A P ++     N+M     I G   +P+EGG+FKL +   +DYP S PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  D TE
Sbjct:    2 SGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  183 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK-ADETEAVETAKEWTRLYA 536
            +M ++  +I GP+++PYEGG + L++ + E YP+S P V F TKI HPNI    G +C+DILK  WSPA  +++  L+I +LLS  +   PL+ + AK  +  D+T      +  T LYA
Sbjct:   33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYA 152          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 48/146 (32.88%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            R+VKE + L  +P P +    ++D N+  ++ ++L P Q PY    F L +  P +YP   P ++F TKIYHPN+D+ G+ICL I+  + W P  +   VL ++  L++ PN  +PL  ++A     +     + A+E+T  +  D
Sbjct:    6 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 150          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2R1_HUMAN4.961e-1835.21Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UB2R2_RABIT1.444e-1736.43Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE1.444e-1736.43Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN1.444e-1736.43Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC12_YARLI2.462e-1733.33NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_SCHPO3.216e-1743.53NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_CANGA3.216e-1734.11NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC9_PAGMA4.200e-1735.21SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC16_SCHPO5.485e-1740.83Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UB2L6_HUMAN5.485e-1732.88Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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