DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            R+ K+   L    +  IS    +D++  F V I  P    Y  G F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I TV+  +  L + PN +DPL+ + A
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSIK-PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAA 152          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 515
            +I+ P +  Y  G     L   E YP+  PKV  L KI+HPNID  G +CL+IL++ WSPAL +++++  +  L   PNP+DPL+ + AK     E E  E  +
Sbjct:   66 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            RI K+   L       I  S  +D + +   +++ P +  Y+GG F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL+   A+
Sbjct:   33 RIQKDINELNLPKTCEIEFSDHDDLLNF--KLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL+   A+
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL+   A+
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  195 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            FN+ I  P+   Y+   F+  + +P  YP   PKV   T +YHPNID  G +CL+IL+  W P L I TV+  +  L   PNPDDPL+ + A+
Sbjct:  108 FNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQ 199          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            RI K+   L       IS S  +D + +   +++ P +  Y+ G F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL+   A+
Sbjct:   33 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            RI K+   L       I  S  +D + +   +++ P +  Y+GG F     + + YP   PKV+  T +YHPNID  G +CL+IL++ W P L I +++  +Q L   PNP+DPL+   A+
Sbjct:   33 RIQKDITELNLPKTCEIEFSDHDDLLNF--KLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 47/147 (31.97%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  108 RRIVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            +R+ KE + L  E P    +    EDN+  ++ ++L P + PY    F+L +  P +YP   P V+F T+IYHPN+D+ GR+CL I+ K  W  + +   VL ++  L++ P P  P+   +A+    D     + A+E+T  +  D
Sbjct:    5 KRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGVD 150          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 49/151 (32.45%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  108 RRIVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            R +VKE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ E     +++ + YA
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
RCE1_ARATH3.556e-1637.50NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC12_YEAST4.644e-1639.42NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_XENTR4.644e-1634.71NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_MOUSE4.644e-1634.71NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.644e-1634.71NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_DICDI4.644e-1641.94NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_BOVIN4.644e-1634.71NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_XENLA6.065e-1634.71NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UB2L6_BOVIN1.035e-1531.97Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2F_XENTR1.351e-1532.45NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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