DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 49/151 (32.45%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  108 RRIVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            R +VKE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ E     +++ + YA
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            +R+ KE   L  E  P +    ++D       M+L P Q PY    F L +  P +YP+  P +RF TKIYHPNI + G +CL ++  + W P  +   VL ++  L+S PN ++P+   +A     D     + A+E+T  Y  D
Sbjct:    5 KRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLLPDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGVD 150          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 45/136 (33.09%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDN-----MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            R+ +E ++   +   G  A P + +     +  + V I G  ++ +EGG++KL +  PE+YP   PK RF   ++HPN+   G +CL IL ++  W PA+ I+ +LL IQ LL  PN   P        +K D+ E
Sbjct:    8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 473
            + + P    Y GG +   +F+ + YPM  P V+ + +IYHPNID  G +CL++L++ W+PAL I+++++ I  L   PN  DPL+ + AK
Sbjct:   63 LAIKPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAK 152          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            +I+ P +  Y  G F     +  +YP   PKV+  T++YHPNID  G +CL+IL++ W+P L I +++  +Q L   PNP+DPL+   A
Sbjct:   59 LIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAA 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 533
            R+ +E +    +   G  A P+ +     N+  +N  I G +++ +EGGV+ L +   EDYP   PK RF    +HPN+   G +CL IL ++  W P++ I+TVLL IQ LL  PNP  P        +  ++ E  +  K  +++Y
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  210 LGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            + P +  Y GG F+  +   + YP+  P V+ L  IYHPNID  G ICL++L++ WSP + ++TV+L +  L   PN  DPL+   A
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            R+ +E   ++    P I     E ++ ++ ++  GP  +PY+ G +   +   E+YP  AP +RF+T I H NI+  GR+C  IL   ++P ++I  +L  I  LL  P+ +DPL  N+A
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLA 1256          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   93 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 452
            SG    R+ +E +    +   G  A P ++     N+  +   I G   +P+EGG+FKL +   +DYP S PK +F   ++HPN+   G +CL IL++   W PA+ I  + + IQ LL+ PN  +P
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEP 128          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/129 (31.78%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  171 PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            P  + + YF + ++ P +  Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ +     +++ + YA
Sbjct:   57 PDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBE2F_XENLA1.351e-1532.45NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UB2L6_RAT1.351e-1532.88Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC9_SCHPO1.765e-1533.09SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC12_KLULA1.765e-1538.89NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBC12_DROME1.765e-1539.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC9_DICDI2.305e-1532.43Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC12_ASHGO3.010e-1540.23NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC4_MIMIV5.134e-1532.50Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC9_MESAU6.706e-1533.86SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBE2F_CHICK8.758e-1531.78NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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