DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 470
            R+ K+   L    +  IS    ++++  F V I  P +  Y  G F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I TV+  +  L + PN +DPL+   A
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAA 153          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   90 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            AS     RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  + +VL+SIQ+L++
Sbjct:   55 ASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMT 177          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:   75 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 190          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 48/151 (31.79%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  108 RRIVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            R ++KE   L +  P+      P E+ + +F + I  P +  Y GG F+ E+ +PE Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+ + A+H   D+ +     +++ + YA
Sbjct:   35 RLLIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   90 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            AS     RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  + +VL+SIQ+L++
Sbjct:   55 ASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMT 177          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 220          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 220          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLS 431
            RI ++   +  EP PG+   P   +M   + +I GP  +PYEGG F      P DYP+  P+V+ +T       ++PN  + G++CL IL       WSPA  I +VL+SIQ+L++
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMT 218          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 47/157 (29.94%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   93 SGNLPRRIVKETQRLLSEPAPGISASP---AEDNMRYFN--VMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLS--------DNIAKHWKADETEAVETAKE 518
            SG    R+ +E +    +   G  A P   A+  +  FN    I G   + +EGG++++ +   +D+P + PK +F   ++HPN+   G +CL +L +   W P++ I+ +L+ IQ LL+ PN +DP           N A++ K  + EAV+ A E
Sbjct:    2 SGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            +R+ KE + L  E  P +    ++D       M+L P Q PY    F++ +  P +YP   P +RF TKIYHPN+ + G +CL ++  + W P  +   VL ++  L+S PN ++P+   +A     +     + A+E+T  +  D
Sbjct:    5 KRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLLPDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFTLKFGVD 150          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB12L_ARATH8.758e-1536.67Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2Z_XENTR1.494e-1434.96Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_DANRE1.951e-1436.21Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBE2F_DANRE1.951e-1431.79NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2Z_XENLA2.548e-1434.96Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT2.548e-1436.21Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE2.548e-1436.21Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN2.548e-1436.21Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC9_CAEEL4.346e-1429.94SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UB2L6_MOUSE4.346e-1430.14Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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