DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            + + P +  Y+GG F+ E  +P+ Y M  PKV+ LTKI+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ +  +   E+ + YA
Sbjct:   67 LTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  132 RLLSEPAPGISAS--PAEDNMRYFN----VMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 515
            R L++P   I +     ED+   F     VM+L    S Y GG FK ++  PED+P S P+ RF   IYHPN+ + GR+C+ IL             + WSP   + +VL+SI +LL  PN + P + + A  ++ +  +  +  K
Sbjct:   17 RELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLN-EDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVK 161          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            + + P +  Y+GG F+ E  +P+ Y M  PKV+ LTKI+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ +  +   E+ + YA
Sbjct:   67 LTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 39/137 (28.47%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            +R+ +E ++   +   G  A P +      +++ +   I G   + + GGV+ + +  P +YP   PKV+F    YHPN+   G ICL IL +   W PA+ ++ ++L +Q LL +PNP+ P  +   + +  ++ E
Sbjct:    7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  204 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            + + P +  Y+GG F+ E+ +P+ Y M  PKV+ LTKI+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N  DPL+   A+H   D+ +  +   E+ R YA
Sbjct:   67 LTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 44/150 (29.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            R +VKE   L +           + N  +   + + P +  Y+GG F+ E  +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ +     +++ + YA
Sbjct:   35 RLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  171 PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            P  + +  F + +  P +  Y+GG F+ E  +P+ Y M  PKV+ LTKI+HPNI + G ICL +L++       W+P   ++ V+  + +L +   N DDPL+   A+H   D+ +      ++ + YA
Sbjct:   57 PDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 431
            +R+ KE   L + P P IS +   DN+  + + + G   S Y+G  FKL+      YP+ +P+V F+ T   HP+I   G ICL IL D WSPAL + +V LSI ++LS
Sbjct:    7 KRLQKELLDLKTNPPPCISITEG-DNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 431
            MAS    +R+ KE + +   P P I A+P EDN+  ++ +I GP ++PYE G +   L  P DYP + P +R LT   +    +  R+CL   D   D W+P+  + T+L  + + ++
Sbjct:    1 MASRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 500
            MAS    +R+ KE + +++ P P I A+P EDN+  ++ +I GP  +PYE G +   L  P DYP + P +R +T   +    +  R+CL   D   + W+PA  + T+L     LLS    D+  + +++   K   T A
Sbjct:    1 MASIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTIL---NGLLSFMTGDEQTTGSVSTSDKDKRTLA 136          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBE2F_RAT7.414e-1433.90NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBC3_YEAST7.414e-1432.88Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UB2FA_MOUSE7.414e-1433.90NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBC9_YEAST1.652e-1328.47SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UB2FB_MOUSE2.157e-1333.90NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2F_BOVIN2.817e-1329.33NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBE2F_HUMAN3.679e-1331.78NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBE2W_DICDI4.806e-1340.37Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBC6_ASHGO1.071e-1233.05Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_KLULA1.398e-1231.91Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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