DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 464
            R+ KE       P  G       DN++ + + ++G   + Y    ++L++  PE YPM +P+V FL     HP+I   G ICLDIL D WSPA+ + ++ +SI ++LS+       +DN
Sbjct:   19 RLQKELVEWQMNPPTGFKHK-VTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDN 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 464
            R+ KE       P  G       DN++ + + + G   + Y    ++L++  PE YPM AP+V F++    HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+       +DN
Sbjct:   19 RLQKELSEWQLNPPTGFRHK-VTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADN 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 467
            MA+    +R+ KE + ++  P P I A P EDN+  ++ +I GP+ +PY+GG +   L  P DYP   P +R +T    + PN     R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTIL---NGLLSFMTSDEATTGSI 125          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 464
            R+ KE     + P  G       DN++ + + + G   + Y    ++L++  PE YPM AP+V F      HP+I   G ICLD+L D WSPA+++ ++ LSI ++LS+ +      DN
Sbjct:   19 RLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDN 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 38/116 (32.76%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  156 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDIL--KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 494
            GI+A P  ++M  + V I G   S ++G VF+L +    +Y  + P V+F+T  +HPN+D   G+ C+D L   +KW+    + ++LL++Q +LS P  ++P++   A+    DE+
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDES 138          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 46/162 (28.40%), Postives = 74/162 (45.68%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG*RLELV 563
            MAS    +R++KE   L   P   + A PA +N+  ++ +I GP  +PYEGG +   L  P DYP   P +R +T           R+CL   D     W+P+  + T+L+ + + ++        SD I        T  + T++   R YA D  R  ++
Sbjct:    1 MASKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT--------SDEIT-------TGGIVTSESTRRTYAKDTKRFNIM 145          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  225 SPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL--------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVE 506
            S Y G + K  +  P  YP+  P ++F++K++HPNI + G++C+ IL              KDKW+P   IRT+++SI  +L++PN   P + + +  ++ +  E ++
Sbjct:   78 SLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIK 185          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 3
Query:   87 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 467
            MA+    +R+ KE + ++  P P I A P E+N+  ++ +I GP  +PY+GG +   L  P DYP   P +R +T   +    +  R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATIL---NGLLSFMTGDESTTGSI 125          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  111 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 464
            R+ KE       P  G       DN++ + + + G   + Y    + L++  P+ YPM AP+V F+     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+       +DN
Sbjct:   19 RLQKELSEWQVNPPTGFKHR-VTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDN 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 38/116 (32.76%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  156 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 494
            GI+A P  ++M  + V I G   S ++G VF+L +    +Y  + P V+F+T  +HPN+D   G+ C+D L +  KW+    + ++LL++Q +LS P  ++P++   A+    DE+
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDES 138          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC16_ARATH1.398e-1233.61Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH1.398e-1234.45Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC6_YEAST1.826e-1233.33Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC17_ARATH5.313e-1233.61Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2U_HUMAN9.063e-1232.76Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC6_SCHPO9.063e-1228.40Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
Y1A1_ENCCU1.184e-1130.56Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC6_CANGA1.184e-1131.54Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC18_ARATH1.184e-1133.61Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBE2U_MACFA1.546e-1132.76Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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