DY257635

Overview
NameDY257635
Unique NameDY257635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.049e-28
Identity = 67/144 (46.53%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            +R  KE  R        I      D+       I GP  +PYEGG F LE+ +PE YP + PKVRF+T+I+HPNI  + G ICLDILKD W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K      + TAK WT  YA
Sbjct:   10 KREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYA 153          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.049e-28
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 536
            +R+ KE   +L  P    SA   +DN++ +   + GP  SP+E GVF +++ +P DYP   P ++F TKIYHPNI    G IC ++    WSP L+I  VL +I+++L+ PNPD+PL   IA+ +K D     +TAKEWT+ YA
Sbjct:    5 KRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.049e-28
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            RR++++ +RL S+P  GIS +P E+N+  +  +I GP  S +EG  FKL L   E+YP  AP V+FL+K++HPN+   G ICLDIL+++WSP   I  +L SIQ+LL  PNP+ P +   A+ ++ ++ E     KE
Sbjct:    7 RRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            +R++ + +RL  +P  GIS +P ++N+ ++N +I GP  +P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  VL SIQ+LL  PNPD P +   A+ +  ++ E
Sbjct:    7 KRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKRE 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E     +E
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  ++ E     +E
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 518
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +   + E     +E
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 54/130 (41.54%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +   + E
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKRE 136          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 62/145 (42.76%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 542
            +RI  E + ++S+ +   S     +N+  +  +I GP  +PYEGG+F L +  P DYP   PK  F T IYHPNI+  G IC++ILKDKW+PAL +  VLLSI  LL  PNPDDPL   I + +K +  +  + A+E+T  +A++
Sbjct:   11 QRIAMEYRAMISKESL-FSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHANN 154          
BLAST of DY257635 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  108 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 497
            RR++++ ++L  +P  G+S +P EDN+  +  +I GP ++P+E G FKL L   E+YP   P V+F++K++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ ++ +  E
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136          
The following BLAST results are available for this feature:
BLAST of DY257635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBCD4_DROME4.049e-2846.53Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBCB_DICDI4.049e-2842.36Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC2_DICDI4.049e-2843.07Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC3_ARATH5.289e-2843.08Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_WHEAT5.289e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA5.289e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH5.289e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH5.289e-2841.54Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC31_ARATH2.010e-2742.76Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC1_CAEEL2.010e-2740.00Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CE01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257635 ID=DY257635; Name=DY257635; organism=Citrus sinensis; type=EST; length=669bp
ACGAGAAACCTAAAGAGGAAAAGAGGGAGAGGGAAAAAAAGACGATCGAT
TTCTGACTCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAGTGGCAA
CCTCCCTCGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAG
CTCCAGGCATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAAT
GTAATGATTCTTGGTCCATCTCAGTCTCCTTATGAAGGTGGGGTTTTCAA
GTTGGAGTTGTTTTTGCCTGAAGATTATCCAATGTCCGCTCCTAAGGTTC
GATTTCTGACCAAAATATATCATCCTAACATAGACAAGCTTGGAAGGATA
TGCCTTGATATTTTGAAAGATAAATGGAGTCCCGCCCTGCAAATCCGCAC
AGTCCTGCTGAGTATCCAAGCTCTTTTGAGTGCTCCGAACCCAGACGATC
CACTTTCTGATAACATTGCAAAGCATTGGAAGGCAGATGAGACTGAAGCT
GTTGAAACTGCGAAGGAATGGACCCGGTTATATGCAAGTGATGGGTGAAG
GCTAGAGCTTGTTCGAGGATATTTCTCTACAAGTTTATGTTAAAAACACT
AATTGATGTATGAACAGATGTGTAAAAATGTTTCTCAATCGGTCTGTTAT
TTGAATGTTCCACTTGTAT
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